########################################
# Program: needle
# Rundate: Tue 19 Apr 2011 12:36:24
# Commandline: needle
#    -asequence C:\Users\KUCSBL319\AppData\Local\Temp\needle07061633812897027399.jembosstmp
#    -bsequence C:\Users\KUCSBL319\AppData\Local\Temp\needle18776211897930177182.jembosstmp
#    -datafile EBLOSUM30
#    -gapopen 0.0
#    -gapextend 0.0
#    -noendweight
#    -endopen 10.0
#    -endextend 0.5
#    -brief
#    -aformat srspair
#    -auto
# Align_format: srspair
# Report_file: pax6_drome.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: PAX6_DROME
# 2: AAU12168.1
# Matrix: EBLOSUM30
# Gap_penalty: 0.0
# Extend_penalty: 0.0
#
# Length: 896
# Identity:     317/896 (35.4%)
# Similarity:   373/896 (41.6%)
# Gaps:         513/896 (57.3%)
# Score: 2430.0
# 
#
#=======================================

PAX6_DROME         1 MRNLPCLGTAGGSGLGGIAGKPSPTMEAVEASTASHRHSTSSYFATTYYH     50
                     |:|         |                                     
AAU12168.1         1 MQN---------S-------------------------------------      4

PAX6_DROME        51 LTDDECHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQV    100
                           ||||||||||||.|||||||||||||||||||||||||||||||
AAU12168.1         5 ------HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQV     48

PAX6_DROME       101 SNGCVSKILGRYYETGSIRPRAIGGSKPRVATA-EVVSKISQYKRECPSI    149
                     ||||||||||||||||||||||||||||||||  ||||||:|||||||||
AAU12168.1        49 SNGCVSKILGRYYETGSIRPRAIGGSKPRVAT-PEVVSKIAQYKRECPSI     97

PAX6_DROME       150 FAWEIRDRLLQ-ENVCTNDNIPSVSSINRVLRNLAAQKE-QQSTGSGSSS    197
                     ||||||||||  |.|||||||||||||||||||||:  | ||        
AAU12168.1        98 FAWEIRDRLL-SEGVCTNDNIPSVSSINRVLRNLAS--EKQQ--------    136

PAX6_DROME       198 TSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGG    247
                              :     |      |           |             | 
AAU12168.1       137 ---------M-----G------A-----------D-------------G-    141

PAX6_DROME       248 ASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTR    297
                                 :|:|||:||                   ||      | 
AAU12168.1       142 ------------MYDKLRMLN-------------------GQ------T-    153

PAX6_DROME       298 SSHPQLVHGNHQALQQHQQQSW---PPRHYSGSWYP-TSLSEIPISSAPN    343
                             |           ||   |     | ||| ||   :|      
AAU12168.1       154 --------G-----------SWGTRP-----G-WYPGTS---VP------    169

PAX6_DROME       344 IASVTAYASG-PSLAHSLSPPNDIESLASIGHQRNCPVATEDIHLKKELD    392
                              | |: :       |       |    |    :      :  
AAU12168.1       170 ---------GQPT-Q-------D-------G----C----Q------Q--    179

PAX6_DROME       393 GHQSDETGSGEGENSNGG--ASNIGNTED-D--QARLI-LKRKLQRNRTS    436
                       |  | | | |||:|    :|| |  || |  |:||  |||||||||||
AAU12168.1       180 --Q--E-G-G-GENTN--SISSN-G--EDSDEAQMRL-QLKRKLQRNRTS    216

PAX6_DROME       437 FTN-DQIDSLEKEFERTHYPDVFARERLAGKIG-LPEARIQVWFSNRRAK    484
                     ||  :||::||||||||||||||||||||.||  ||||||||||||||||
AAU12168.1       217 FT-QEQIEALEKEFERTHYPDVFARERLAAKI-DLPEARIQVWFSNRRAK    264

PAX6_DROME       485 WRREEKLRNQRR--TPNSTGASATSSSTSATASLTDSPNS-LSACSSLLS    531
                     ||||||||||||  : | |                  | | :        
AAU12168.1       265 WRREEKLRNQRRQAS-N-T------------------P-SHI--------    285

PAX6_DROME       532 GSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCT    581
                          |    |   || | :||.|    :       :   |||       
AAU12168.1       286 -----P----I---SS-S-FSTSV----Y-------Q---PIP-------    300

PAX6_DROME       582 SDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPR    631
                            |         |          |    :          | :|  
AAU12168.1       301 -------Q---------P----------T----T----------P-VS--    307

PAX6_DROME       632 LNFNSGS-FG----AMYSNMHHTALSMSDSYGAVTPIPSF---NHSAVGP    673
                      .|:||| :|    | ::|   |       |.|:.|:|||   |  .: |
AAU12168.1       308 -SFTSGSMLGRTDTA-LTN---T-------YSALPPMPSFTMAN--NL-P    342

PAX6_DROME       674 LAPPSPIP-QQGDLTPSSLYP-CHMTLRPPPMAPAHHHIVPGDGGRPAGV    721
                     ::|  |:| |    | || |  | | |   |.:|:    |  : ||    
AAU12168.1       343 MQP--PVPSQ----T-SS-Y-SC-M-L---PTSPS----V--N-GR----    367

PAX6_DROME       722 GLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASA    771
                        |              |:  : |:  ||:|:                 
AAU12168.1       368 ---S--------------YD--T-YT--PPHMQ-----------------    378

PAX6_DROME       772 NVTPHHTIAQESCP--SPCSSASHFGVAHSSGF-SSDP-IS-PAVSSYAH    816
                       | |:: :|   |  :  |     |:: |:|: |  | :| | |   : 
AAU12168.1       379 --T-HMN-SQ---PMGT--S-----GTT-STGLIS--PGVSVP-V---Q-    406

PAX6_DROME       817 MSYNYASSANTMTPSSASGTSAHVAPG-K-QQFFASCFYSPW--V-    857
                                 :|    | |   .|  : |       |  |  : 
AAU12168.1       407 ------------VP----G-S---EP-DMSQ-------Y--WPRLQ    422


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