########################################
# Program: water
# Rundate: Tue 19 Apr 2011 12:41:14
# Commandline: water
#    -asequence C:\Users\KUCSBL319\AppData\Local\Temp\water07420912993956248723.jembosstmp
#    -bsequence C:\Users\KUCSBL319\AppData\Local\Temp\water17913291046642530583.jembosstmp
#    -brief
#    -aformat srspair
#    -auto
# Align_format: srspair
# Report_file: pax6_drome.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: PAX6_DROME
# 2: AAU12168.1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 582
# Identity:     253/582 (43.5%)
# Similarity:   292/582 (50.2%)
# Gaps:         193/582 (33.2%)
# Score: 1054.5
# 
#
#=======================================

PAX6_DROME        57 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVS    106
                     ||||||||||||.|||||||||||||||||||||||||||||||||||||
AAU12168.1         5 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVS     54

PAX6_DROME       107 KILGRYYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRD    156
                     ||||||||||||||||||||||||||.||||||:||||||||||||||||
AAU12168.1        55 KILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRD    104

PAX6_DROME       157 RLLQENVCTNDNIPSVSSINRVLRNLAAQKEQQSTGSGSSSTSAGNSISA    206
                     |||.|.|||||||||||||||||||||::|:|.                 
AAU12168.1       105 RLLSEGVCTNDNIPSVSSINRVLRNLASEKQQM-----------------    137

PAX6_DROME       207 KVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGEGSE    256
                                                             ||        
AAU12168.1       138 ----------------------------------------GA--------    139

PAX6_DROME       257 QEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHG    306
                      :.:|:|||:||.|..                                  
AAU12168.1       140 -DGMYDKLRMLNGQTG----------------------------------    154

PAX6_DROME       307 NHQALQQHQQQSWPPRHYSGSWYP-TSLSEIPISSAPNIASVTAYASGPS    355
                                ||..|   ..||| ||:...|..                
AAU12168.1       155 -----------SWGTR---PGWYPGTSVPGQPTQ----------------    174

PAX6_DROME       356 LAHSLSPPNDIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGE    405
                                                         ||.|..|   |.||
AAU12168.1       175 ------------------------------------DGCQQQE---GGGE    185

PAX6_DROME       406 NSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYP    455
                     |:|..:||..::::.|.||.|||||||||||||.:||::|||||||||||
AAU12168.1       186 NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYP    235

PAX6_DROME       456 DVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASA    505
                     |||||||||.||.||||||||||||||||||||||||||||..::|.:..
AAU12168.1       236 DVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHI    285

PAX6_DROME       506 TSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSS-----PST    550
                     ..||:.:|:.....|...:..||..|||..|.:.:.:....|     ||.
AAU12168.1       286 PISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSF    335

PAX6_DROME       551 LSTNVNAPTLGAGIDSSESPTPIPHIRPSC---TSDNDNGRQSEDCRRVC    597
                     ...| |.|        .:.|.|......||   ||.:.|||..:      
AAU12168.1       336 TMAN-NLP--------MQPPVPSQTSSYSCMLPTSPSVNGRSYD------    370

PAX6_DROME       598 SPCPLGVGGHQNTHHIQSNGHAQGHALVPAIS    629
                     :..|..:..|.|:..:.::|......:.|.:|
AAU12168.1       371 TYTPPHMQTHMNSQPMGTSGTTSTGLISPGVS    402


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