From CSBLwiki
Indicator gene
- ParA is a component of the widely conserved ParABS system that partitions replicons during cell division.
BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= scaffold00005 length=58295
(58,295 letters)
Database: dnaA.blast
1231 sequences; 1,647,534 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
111017022:c3866199-3865186 Rhodococcus sp. RHA1, parA 70 9e-11
>111017022:c3866199-3865186 Rhodococcus sp. RHA1, parA
Length = 1014
Score = 69.9 bits (35), Expect = 9e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 7245 tcgccaaccagaaaggcggcgtcggcaagacgaccctcgccgtcaacctcg 7295
||||||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct: 233 tcgccaaccagaagggcggcgtcggcaagacgaccagcgcggtcaacctcg 283
Database: dnaA.blast
Posted date: Jun 26, 2007 7:49 PM
Number of letters in database: 1,647,534
Number of sequences in database: 1231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,760
Number of Sequences: 1231
Number of extensions: 70760
Number of successful extensions: 6965
Number of sequences better than 1.0e-10: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6954
Number of HSP's gapped (non-prelim): 11
length of query: 58,295
length of database: 1,647,534
effective HSP length: 19
effective length of query: 58,276
effective length of database: 1,624,145
effective search space: 94648674020
effective search space used: 94648674020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)