Genome assembly3

From CSBLwiki

Revision as of 10:27, 22 June 2011 by Gnusnah (Talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Verrucosispora sp.

Contents

Circular view

NC 015434.png NC 015409.png

Log

  1. Illuminia PE -> ABySS -> Fake reads
  2. Fake read + 454(2007.06,07) -> Newbler
  3. Fake read + 454(2007.06,07,2010.09) -> Newbler

Read Libraries

V S 6 1.png

Primers for gap filling

Primer_Verrucosispora_gap

rRNA operon

One plasmid

Sigletons

Singletons

grep Singleton 454ReadStatus.txt > singles.txt
sfffile -o singles.sff -i singles.txt ~/db/genome/Verrucosispora/SEP_2010_PE/GN0TVDJ01.sff ~/db/genome/Verrucosispora/verrucosispora_jem/R_2007_06_22_19_39_57_FLX03070147_adminrig_STACH01/D_2007_06_22_19_39_57_FLX03070147_adminrig_OTFAnalysis/sff/EQ4OWVR01.sff ~/db/genome/Verrucosispora/verrucosispora_jem/R_2007_06_22_19_39_57_FLX03070147_adminrig_STACH01/D_2007_06_22_19_39_57_FLX03070147_adminrig_OTFAnalysis/sff/EQ4OWVR02.sff ~/db/genome/Verrucosispora/verrucosispora_jem/R_2007_07_13_18_06_24_FLX03070147_adminrig_Stach02/D_2007_07_13_18_06_24_FLX03070147_adminrig_OTFAnalysis/sff/ESA5WYK01.sff ~/db/genome/Verrucosispora/verrucosispora_jem/R_2007_07_13_18_06_24_FLX03070147_adminrig_Stach02/D_2007_07_13_18_06_24_FLX03070147_adminrig_OTFAnalysis/sff/ESA5WYK02.sff
sffinfo -s singles.sff > singles.fna
sffinfo -q singles.sff > singles.qual
maq

Submission

Personal tools
Namespaces
Variants
Actions
Site
Choi lab
Resources
Toolbox