http://compbio.korea.ac.kr/wiki/index.php?title=Special:RecentChanges&feed=atom 2012-05-17T01:09:31Z Track the most recent changes to the wiki in this feed. MediaWiki 1.16.0 http://compbio.korea.ac.kr/wiki/index.php/File:2010_3rd_Exam.pdf 2012-05-15T07:55:03Z

<p>uploaded &quot;[[<a href="/wiki/index.php/File:2010_3rd_Exam.pdf" title="File:2010 3rd Exam.pdf">File:2010 3rd Exam.pdf</a>]]&quot;</p>

Igchoi http://compbio.korea.ac.kr/wiki/index.php?title=Chemistry_Companion_Sites&diff=5510&oldid=prev 2012-05-15T07:50:49Z

<p><span class="autocomment">Previous Exams(기출문제지): </span> </p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 07:50, 15 May 2012</td> </tr><tr><td colspan="2" class="diff-lineno">Line 89:</td> <td colspan="2" class="diff-lineno">Line 89:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Previous Exams(기출문제지)==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Previous Exams(기출문제지)==</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">===2011 Spring===</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2011 Spring 1st Exam [[media:2011_1st_Exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2011 Spring 2nd Exam [[media:2011_2nd_Exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2011 Spring 3rd Exam [[media:2011_3rd_Exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">===2010 Fall===</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2010 Fall 1st Exam [[media:2010fall_1st_exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2010 Fall 2nd Exam [[media:2010fall_2nd_exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2010 Fall 3rd Exam [[media:2010fall_3rd_exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===2010 Spring===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===2010 Spring===</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*2010 Spring 1st Exam: download PDF files - [[media:2010spring_1st_examK.pdf|Korean]], [[media:2010spring_1st_examE.pdf|English]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*2010 Spring 1st Exam: download PDF files - [[media:2010spring_1st_examK.pdf|Korean]], [[media:2010spring_1st_examE.pdf|English]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>**[[media:2010spring_1st_examAns.pdf|Answer sheet]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>**[[media:2010spring_1st_examAns.pdf|Answer sheet]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2010 Spring 2nd Exam [[media:2010_2nd_Exam.pdf|download PDF]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*2010 Spring 3rd Exam [[media:2010_3rd_Exam.pdf|download PDF]]</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===2009 Fall===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===2009 Fall===</div></td></tr> </table>

Igchoi http://compbio.korea.ac.kr/wiki/index.php?title=Group_meeting&diff=5509&oldid=prev 2012-05-14T04:21:28Z

<p><span class="autocomment">2012_Spring: </span> </p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 04:21, 14 May 2012</td> </tr><tr><td colspan="2" class="diff-lineno">Line 61:</td> <td colspan="2" class="diff-lineno">Line 61:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;5-17-2012</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;5-17-2012</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:<del class="diffchange diffchange-inline">고아름</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:<ins class="diffchange diffchange-inline">이세영 :&nbsp; Wang T, Ma X, Zhu H, Li A, Du G, Chen J</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:<del class="diffchange diffchange-inline">이세영</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:<ins class="diffchange diffchange-inline">:Available methods for assembling expression cassettes for synthetic biology.2012. Appl Microbiol Biotechnol.(PMID 22311648)</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:남지희</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:남지희<ins class="diffchange diffchange-inline">: Vikas Rao Pejaver, Heewook Lee, and Sun Kim.</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">::Gene Cluster Prediction and Its Application to Genome Annotation.2011. Protein Function Prediction for Omics Era pp. 35-54</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:고아름 : Sinha S, Redfield RJ.Natural DNA Uptake by Escherichia coli.2012. PLoS One. (PMID 22532864) </ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;5-10-2012</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;5-10-2012</div></td></tr> </table>

Jihee http://compbio.korea.ac.kr/wiki/index.php?title=RNAseq&diff=5508&oldid=prev 2012-05-12T12:09:05Z

<p><span class="autocomment">Terminology: </span> </p> <p><b>New page</b></p><div>==External links==<br /> :[http://seqanswers.com/wiki/How-to/RNASeq_analysis RNA-seq analysis HowTo]<br /> :[http://www.bioconductor.org/ Bioconductor]<br /> ::[http://www.bioconductor.org/help/workflows/high-throughput-sequencing/ Using Bioconductor for Sequence Data]<br /> <br /> :[http://seqanswers.com/forums/archive/index.php/t-11138.html Informative Q&amp;A for bacterial RNA-seq processing] (GFF file for HTseq-count)<br /> ::[http://biowiki.org/GffFormat GFF format] <br /> :::GFF is a format for locating &amp; describing genes and other localized features associated with DNA, RNA and Protein sequences.<br /> <br /> ==Terminology==<br /> ;RPKM (reads per kilobase per million reads) = 10^9 * C / (N * L)<br /> :where C = # of mappable reads to a gene (exons), N = total # of mappable reads (size of library), and L = size of gene (bp) or sum of exons PMID 18516045<br /> <br /> ;FPKM (fragments per kilobase per million reads)</div>

Igchoi http://compbio.korea.ac.kr/wiki/index.php?title=Computational_Genomics&diff=5502&oldid=prev 2012-05-12T12:02:43Z

<p><span class="autocomment">RNAseq: </span> </p> <p><b>New page</b></p><div>==Genome sequencing==<br /> ==Transcriptomics==<br /> ===[[RNAseq]]===</div>

Igchoi http://compbio.korea.ac.kr/wiki/index.php?title=Research_topics&diff=5500&oldid=prev 2012-05-11T08:56:28Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 08:56, 11 May 2012</td> </tr><tr><td colspan="2" class="diff-lineno">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>| __TOC__ &nbsp;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>| __TOC__ &nbsp;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">==[[Computational Genomics]] by Next Generation Sequencing (NGS)==</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Evolutionary perspective==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Evolutionary perspective==</div></td></tr> </table>

Igchoi