SB Course
From CSBLwiki
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**[http://bioconductor.org/packages/2.3/bioc/html/SBMLR.html SBMLR package] - [http://bioconductor.org/packages/2.3/bioc/vignettes/SBMLR/inst/doc/manual.pdf Manual] | **[http://bioconductor.org/packages/2.3/bioc/html/SBMLR.html SBMLR package] - [http://bioconductor.org/packages/2.3/bioc/vignettes/SBMLR/inst/doc/manual.pdf Manual] | ||
==Term project== | ==Term project== | ||
| + | ===2009 Fall=== | ||
*Target organims | *Target organims | ||
**''Shewanella oneidensis'' MR-1 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=son KEGG pathway map] | **''Shewanella oneidensis'' MR-1 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=son KEGG pathway map] | ||
**''Saccharophagus degradans'' 2-40 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=sde KEGG pathway map] | **''Saccharophagus degradans'' 2-40 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=sde KEGG pathway map] | ||
Revision as of 09:41, 23 October 2009
Contents |
Biomodel database
Running SBML
- SBML softwares - guide table
- KEGG2SBML - KEGG pathway converter to SBML (written in Perl)
R-project
- R-project
- BioConductor - based on R package
Term project
2009 Fall
- Target organims
- Shewanella oneidensis MR-1 KEGG pathway map
- Saccharophagus degradans 2-40 KEGG pathway map
