Microbiology Companion Site

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==2012 Spring==
 +
===Exam===
 +
;Midterm [[media:2012-LIST203-midtermAns.pdf|Answer sheet]]
 +
 +
==2011 Fall==
 +
 +
==2011 Spring==
 +
===Exam===
 +
;Midterm [[media:2011-LIST203-midtermAns.pdf|Answer sheet]]
 +
===Lectures===
 +
;Chapter 2
 +
:Microscopy
 +
::[http://micro.magnet.fsu.edu/primer/index.html Optical microscopy primer] - a very well organized website
 +
 +
;Chapter 3
 +
:Bacterial Cytoskeleton
 +
::[http://www.nature.com/nature/journal/v413/n6851/full/413030a0.html Cytoskeleton: Evolution in bacteria]
 +
:Ladderane
 +
::[http://www.nature.com/nature/journal/v419/n6908/full/nature01128.html Linearly concatenated cyclobutane lipids form a dense bacterial membrane]
 +
:Bacterial motility
 +
::[http://www.microbiologybytes.com/video/motility.html Various motility]
 +
 +
;Chapter 4
 +
:Clathrin dependent endocytosis
 +
::[http://www.youtube.com/watch?v=eRslV6lrVxY Animation1]
 +
::[http://www.youtube.com/watch?v=-ZFnO5RY1cU Animation 2]
 +
 +
;Chapter 5
 +
:[http://www.expasy.org/viralzone/ EXPASY Viralzone]
 +
 +
:Icosahedron origami
 +
::[http://origami.oschene.com/cp/Icosahedral_Twist_Box.pdf Icosahedral_Twist_Box.pdf]
 +
:::[http://www.langorigami.com Robert Lang Origami site]
 +
:::[http://kahuna.merrimack.edu/~thull/origamimath.html Origami mathematics]
 +
::::[http://www.rigb.org/assets/uploads/docs/Activity12_ProjectOrigami.pdf Dodecahedron]
 +
 +
:prions
 +
::[[w:Daniel_Carleton_Gajdusek|Dr. Gaidusek]]
 +
 +
;Chapter 7
 +
<videoflash>gEwzDydciWc|300|200</videoflash>
 +
 +
===Homework===
 +
;Suggested Readings for a term paper - reading report
 +
:#due date (by 6/21/2011, Tue)
 +
:#less than 1,500 words (< 3 pages)
 +
 +
:Avialable in Korean
 +
::#소설처럼 읽는 미생물 사냥꾼 ([http://library.korea.ac.kr/search/detail/CATTOT000045214417?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=1_A_q=%B9%CC%BB%FD%B9%B0+%C0%CC%BE%DF%B1%E2_A_tn_0=m%2F 도서관 링크])
 +
::#극단의 생명: 재미있는 미생물 이야기([http://library.korea.ac.kr/search/detail/CATTOT000000825833?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%B1%D8%B4%DC%C0%C7+%BB%FD%B8%ED_A_x=0_A_y=0 도서관 링크])
 +
::#게놈의 기적 ([http://library.korea.ac.kr/search/detail/CATTOT000045519897?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%B0%D4%B3%F0%C0%C7+%B1%E2%C0%FB 도서관 링크])
 +
::#지루한 사람과 어울리지 마라 : 과학에서 배우는 삶의 교훈 ([http://library.korea.ac.kr/search/detail/CATTOT000045537056?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=james+watson 도서관 링크])
 +
::#미생물의 힘 ([http://library.korea.ac.kr/search/detail/CATTOT000000774106?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%B9%CC%BB%FD%B9%B0%C0%C7+%C8%FB_A_x=0_A_y=0 도서관 링크])
 +
::#미생물과 인간 ([http://library.korea.ac.kr/search/detail/CATTOT000000868942?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=postgate_A_bk_0=Postgate%2C+J.+R 도서관 링크])
 +
::#전염병의 문화사 ([http://library.korea.ac.kr/search/detail/CATTOT000000713979?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=%C0%FC%BF%B0%BA%B4%C0%C7+%B9%AE%C8%AD%BB%E7 도서관 링크])
 +
::#생명 : 최초의 30억 년 : 지구에 새겨진 진화의 발자취 ([http://library.korea.ac.kr/search/detail/CATTOT000045343336?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%BB%FD%B8%ED+%C3%D6%C3%CA%C0%C7+30%BE%EF%B3%E2_A_x=0_A_y=0 도서관 링크])
 +
::#미토콘드리아 : 박테리아에서 인간으로, 진화의 숨은 지배자([http://library.korea.ac.kr/search/detail/CATTOT000045509098?mainLink=/search/tot&briefLink=/search/tot/result?st=EXCT_A_si=1_A_q=%BB%D1%B8%AE%BF%CD+%C0%CC%C6%C4%B8%AE+%BF%C0%C6%C4%BA%F1%B4%CF%BE%C6 도서관 링크])
 +
::#총, 균, 쇠 ([http://library.korea.ac.kr/search/detail/CATTOT000045225960?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%C3%D1+%B1%D5+%BC%E8_A_x=0_A_y=0 도서관 링크])
 +
::#죽음의 향연([http://library.korea.ac.kr/search/detail/CATTOT000045305833?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%C1%D7%C0%BD%C0%C7+%C7%E2%BF%AC_A_x=0_A_y=0 도서관 링크])
 +
 +
:Available in English
 +
::#Microbes and Man [http://library.korea.ac.kr/search/detail/CATTOT000000868942?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=postgate_A_bk_0=Postgate%2C+J.+R Library]
 +
::#March of the microbes : sighting the unseen [http://library.korea.ac.kr/search/detail/CATTOT000045630546?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=march+of+the+microbes Library]
 +
::#A life decoded : my genome, my life [http://library.korea.ac.kr/search/detail/CATTOT000045417044?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=my+genome Library]
 +
::#Guns, germs, and steel: the fates of human societies [http://library.korea.ac.kr/search/detail/CATTOT000000769864?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=Guns+germs+steel_A_bk_2=eng Library]
 +
::#Avoid boring people : lessons from a life in science [http://library.korea.ac.kr/search/detail/CATTOT000045417047?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=avoid+boring+people_A_x=0_A_y=0 Library]
 +
::#Deadly feasts : the "Prion" controversy and the public's health [http://library.korea.ac.kr/search/detail/CATTOT000045449642?mainLink=/search/tot&briefLink=/search/tot/result?st=EXCT_A_si=2_A_q=Rhodes+Richard Library]
 +
 +
==2010 Fall==
 +
*Taxonomic distribution: check & download a freemind file in [[Mind_map|this link (LIST2042010.mm)]]
 +
**download [http://freemind.sourceforge.net/wiki/index.php/Main_Page FreeMind] software
 +
===Exams===
 +
*Midterm [[media:2010-LIST204Midterm.pdf|Answer sheet]]
 +
*Quizam [[media:2010-LIST204Quizam.pdf|Answer sheet]]
 +
===Materials===
 +
*Exploring Life's Origins [http://exploringorigins.org/rnaworld.html Web link] - the RNA world
 +
**Sydney Altman [http://nobelprize.org/nobel_prizes/chemistry/laureates/1989/altman-autobio.html Nobel autobiography]
 +
**Tom Cech [http://www.hhmi.org/research/investigators/cech_bio.html HHMI profile]
 +
**Jack Szostack [http://www.hhmi.org/research/investigators/szostak_bio.html HHMI profile]
 +
*Cosmic calendar
 +
<videoflash>Ln8UwPd1z20|150|100</videoflash>
 +
 +
==2010 Spring==
 +
===Exams===
 +
*Midterm exam: [[media:2010LIST203SpringMidterm.pdf|Answer sheet]]
 +
 +
===Chapters===
 +
*Chapter 6 Microbial Growth
 +
**Cell counting machine: Coulter Counter invented by [http://web.mit.edu/invent/iow/coulter.html Wallace Coulter]
 +
*Chapter 10 Anabolic metabolism
 +
**Calvin cycle - [http://bancroft.berkeley.edu/Exhibits/Biotech/calvin.html Melvin Calvin]
 +
*Chapter 11 Microbial Genetics
 +
**"Throughout history, people have speculated on the substance that carries the instructions to make life.  What carries hereditary information from one generation to the next?  How does it all work?" - The answers can be found at [http://www.dnai.org/a/index.html DNAi]
 +
 +
===Term paper===
 +
*Suggested Readings for a term paper - reading report (6 points by default + 4 points by evaluation = 10 points for your final grade) - <b>due date (6/22/2010, Tue)</b>
 +
#소설처럼 읽는 미생물 사냥꾼 ([http://library.korea.ac.kr/search/detail/CATTOT000045214417?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=1_A_q=%B9%CC%BB%FD%B9%B0+%C0%CC%BE%DF%B1%E2_A_tn_0=m%2F 과학도서관 링크])
 +
#게놈의 기적 ([http://library.korea.ac.kr/search/detail/CATTOT000045519897?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%B0%D4%B3%F0%C0%C7+%B1%E2%C0%FB 과학도서관 링크])
 +
#이것이 생물학이다 ([http://library.korea.ac.kr/search/detail/CATTOT000000801637?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%C0%CC%B0%CD%C0%CC+%BB%FD%B9%B0%C7%D0%C0%CC%B4%D9 과학도서관 링크])
 +
#전염병의 문화사 ([http://library.korea.ac.kr/search/detail/CATTOT000000713979?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=man+and+microbes 과학도서관 링크])
 +
#신의 언어 : 유전자 지도에서 발견한 신의 존재 ([http://library.korea.ac.kr/search/detail/CATTOT000045565415?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=%BD%C5%C0%C7+%BE%F0%BE%EE 과학도서관 링크])
 +
#지루한 사람과 어울리지 마라 : 과학에서 배우는 삶의 교훈 ([http://library.korea.ac.kr/search/detail/CATTOT000045537056?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=james+watson 과학도서관 링크])
 +
*<b>의학도서관에서도 대출가능</b>
 +
*Above books are available in English, too (Check the library)
 +
*Recommend to read
 +
#우연과 필연
 +
#이중나선 ([http://library.korea.ac.kr/search/detail/CATTOT000000011857?mainLink=/search/tot&briefLink=/search/tot/result?st=KWRD_A_si=TOTAL_A_q=%C0%CC%C1%DF%B3%AA%BC%B1_A_tn_0=m%2F 과학도서관 링크], 다른 출판사 책들도 있음)
 +
==2009 Fall==
==2009 Fall==
 +
===Exams===
 +
*1st Exam [[media:2009fall-1st.PDF|PDF download]]
 +
*2nd Exam (quizam) [[media:2009fall-2nd.PDF|PDF download]]
 +
*Final exam [[media:2009-LIST204-final.PDF|PDF download]]
 +
 +
===Content===
*[[Mind_map|Taxonomy in mind map style]]
*[[Mind_map|Taxonomy in mind map style]]
*[http://media.hhmi.org/hl/95Lect2.html HHMI Double life of RNA]: you can watch flash video.
*[http://media.hhmi.org/hl/95Lect2.html HHMI Double life of RNA]: you can watch flash video.
Line 32: Line 146:
===Links===
===Links===
*광우병이야기 - [http://tinyurl.com/6gnqxs 생물학연구정보센터 게시판 글모음] written by 피카소(유승민; 개업의사)
*광우병이야기 - [http://tinyurl.com/6gnqxs 생물학연구정보센터 게시판 글모음] written by 피카소(유승민; 개업의사)
 +
**혼자보기 아쉬운 [http://bric.postech.ac.kr/myboard/read.php?Board=bio_response&id=331 광우병이야기 in Biowave]
*Animation (movie): bacterial translation by ribosome
*Animation (movie): bacterial translation by ribosome
**Source: [http://www.mrc-lmb.cam.ac.uk/ribo/homepage/movies/translation_bacterial.wmv link to translation_bacterial.wmv] - window media format
**Source: [http://www.mrc-lmb.cam.ac.uk/ribo/homepage/movies/translation_bacterial.wmv link to translation_bacterial.wmv] - window media format
Line 39: Line 154:
*중간고사 Midterm exam (answer sheet)([[media:LIST203spring2008midterm.pdf|PDF download]])
*중간고사 Midterm exam (answer sheet)([[media:LIST203spring2008midterm.pdf|PDF download]])
*기말고사 Final exam (answer sheet) ([[media:LIST203spring2008finalexam.pdf|PDF download]])
*기말고사 Final exam (answer sheet) ([[media:LIST203spring2008finalexam.pdf|PDF download]])
 +
 +
==Readings==
 +
*Taxonomy
 +
<biblio>tax pmid=8282683</biblio>
 +
===Links===
===Links===
*[http://www.microbeworld.org/ MicrobeWorld] 미생물세계 podcast
*[http://www.microbeworld.org/ MicrobeWorld] 미생물세계 podcast
*[http://www.asm.org/microbe/index.asp Microbe] 미국 미생물학회 뉴스지
*[http://www.asm.org/microbe/index.asp Microbe] 미국 미생물학회 뉴스지
*[http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] by Protein Data Bank ([http://www.pdb.org PDB])
*[http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] by Protein Data Bank ([http://www.pdb.org PDB])
 +
==Fun stuffs==
==Fun stuffs==
*[http://nobelprize.org/nobel_prizes/chemistry/laureates/2001/illpres/game.html Chirality]: Chirality flash game (for very beginner)
*[http://nobelprize.org/nobel_prizes/chemistry/laureates/2001/illpres/game.html Chirality]: Chirality flash game (for very beginner)
*[http://www.youtube.com/watch?v=x5yPkxCLads The PCR song]
*[http://www.youtube.com/watch?v=x5yPkxCLads The PCR song]
<videoflash>x5yPkxCLads|200|150</videoflash>
<videoflash>x5yPkxCLads|200|150</videoflash>

Latest revision as of 05:41, 1 May 2012

Contents

2012 Spring

Exam

Midterm Answer sheet

2011 Fall

2011 Spring

Exam

Midterm Answer sheet

Lectures

Chapter 2
Microscopy
Optical microscopy primer - a very well organized website
Chapter 3
Bacterial Cytoskeleton
Cytoskeleton: Evolution in bacteria
Ladderane
Linearly concatenated cyclobutane lipids form a dense bacterial membrane
Bacterial motility
Various motility
Chapter 4
Clathrin dependent endocytosis
Animation1
Animation 2
Chapter 5
EXPASY Viralzone
Icosahedron origami
Icosahedral_Twist_Box.pdf
Robert Lang Origami site
Origami mathematics
Dodecahedron
prions
Dr. Gaidusek
Chapter 7

Homework

Suggested Readings for a term paper - reading report
  1. due date (by 6/21/2011, Tue)
  2. less than 1,500 words (< 3 pages)
Avialable in Korean
  1. 소설처럼 읽는 미생물 사냥꾼 (도서관 링크)
  2. 극단의 생명: 재미있는 미생물 이야기(도서관 링크)
  3. 게놈의 기적 (도서관 링크)
  4. 지루한 사람과 어울리지 마라 : 과학에서 배우는 삶의 교훈 (도서관 링크)
  5. 미생물의 힘 (도서관 링크)
  6. 미생물과 인간 (도서관 링크)
  7. 전염병의 문화사 (도서관 링크)
  8. 생명 : 최초의 30억 년 : 지구에 새겨진 진화의 발자취 (도서관 링크)
  9. 미토콘드리아 : 박테리아에서 인간으로, 진화의 숨은 지배자(도서관 링크)
  10. 총, 균, 쇠 (도서관 링크)
  11. 죽음의 향연(도서관 링크)
Available in English
  1. Microbes and Man Library
  2. March of the microbes : sighting the unseen Library
  3. A life decoded : my genome, my life Library
  4. Guns, germs, and steel: the fates of human societies Library
  5. Avoid boring people : lessons from a life in science Library
  6. Deadly feasts : the "Prion" controversy and the public's health Library

2010 Fall

Exams

Materials

2010 Spring

Exams

Chapters

Term paper

  1. 소설처럼 읽는 미생물 사냥꾼 (과학도서관 링크)
  2. 게놈의 기적 (과학도서관 링크)
  3. 이것이 생물학이다 (과학도서관 링크)
  4. 전염병의 문화사 (과학도서관 링크)
  5. 신의 언어 : 유전자 지도에서 발견한 신의 존재 (과학도서관 링크)
  6. 지루한 사람과 어울리지 마라 : 과학에서 배우는 삶의 교훈 (과학도서관 링크)
  1. 우연과 필연
  2. 이중나선 (과학도서관 링크, 다른 출판사 책들도 있음)

2009 Fall

Exams

Content

2009 Spring

Exams

Extra

  1. Pace, Norman. "Time for a Change" Nature(2006) 441:289
  2. Berg, Howard. "Motile Behavior of Bacteria." Physics Today on the Web

2008 Fall LIST204

Exams

Taxonomy summary

Links

2008 Spring LIST203

Exams

Readings

Error fetching PMID 8282683:
  1. Error fetching PMID 8282683: [tax]

Links

Fun stuffs

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