Group meeting
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====2012_Spring==== | ====2012_Spring==== | ||
;6-20-2012 | ;6-20-2012 | ||
- | :고아름 | + | :고아름 : Systems metabolic engineering of microorganisms for natural and non-natural chemicals. |
- | : | + | ::Lee JW, Na D, Park JM, Lee J, Choi S, Lee SY. |
- | :노한성 | + | ::Nat Chem Biol. 2012 May 17;8(6):536-46. doi: 10.1038/nchembio.970.(PMID 22596205) |
+ | |||
+ | :노한성 : The layout of a bacterial genome. | ||
+ | ::Képès F, Jester BC, Lepage T, Rafiei N, Rosu B, Junier I. | ||
+ | ::The layout of a bacterial genome.(PMID 22483986) | ||
+ | |||
+ | :김병호 : Synthetic biology and the development of tools for metabolic engineering | ||
+ | ::Keasling JD(PMID 22314049) | ||
;6-13-2012 | ;6-13-2012 | ||
- | :고혁진 | + | :고혁진 : Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM, Seshasayee AS. |
- | :박홍재 | + | ::Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription. |
- | : | + | ::Nat Commun. 2012 Jun 6;3:886. doi: 10.1038/ncomms1878.(PMID 22673913) |
+ | |||
+ | :박홍재 : King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. | ||
+ | ::Computational design of self-assembling protein nanomaterials with atomic level accuracy. | ||
+ | ::Science. 2012 Jun 1;336(6085):1171-4.(PMID 22654060) | ||
+ | :남지희: Vikas Rao Pejaver, Heewook Lee, and Sun Kim. | ||
+ | ::Gene Cluster Prediction and Its Application to Genome Annotation. | ||
+ | ::2011. Protein Function Prediction for Omics Era pp. 35-54 | ||
;6-8-2012 | ;6-8-2012 | ||
:노한성 : The Tomato Genome Consortium | :노한성 : The Tomato Genome Consortium |
Revision as of 02:08, 22 June 2012
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讀書百遍義自見
Group sister sites
Lab. Bulletin: 게시판(자료실) |
Google Group Page: 메일링 리스트 |
Data image sharing: 데이터 사진 |
Connotea-kucsbl: 참고문헌 공유 |
- How to embed your google calendar - embedhelper
Group meeting Schedule
2012 Schedule
- Rule
- 저널발표 순서 (Topics: NGS & Synthetic biology applications)
- Synbio 김병호-고혁진-박홍재- 이세영-고아름(>매주 1명 이상) (김병호 bi-weekly)
- Compbio 노한성-남지희-김수진(가능할 때)-민병남 (매주 1명씩) (남지희 bi-weekly)
- 발표시간 엄수
리뷰논문 20분이내 실험논문/실험결과 15분이내 PPT slide 5장 이내로 만들것
- 발표논문 미리 읽기 (아래 링크 PMID = pubmed id)
2012_Spring
- 6-20-2012
- 고아름 : Systems metabolic engineering of microorganisms for natural and non-natural chemicals.
- Lee JW, Na D, Park JM, Lee J, Choi S, Lee SY.
- Nat Chem Biol. 2012 May 17;8(6):536-46. doi: 10.1038/nchembio.970.(PMID 22596205)
- 노한성 : The layout of a bacterial genome.
- Képès F, Jester BC, Lepage T, Rafiei N, Rosu B, Junier I.
- The layout of a bacterial genome.(PMID 22483986)
- 김병호 : Synthetic biology and the development of tools for metabolic engineering
- Keasling JD(PMID 22314049)
- 6-13-2012
- 고혁진 : Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM, Seshasayee AS.
- Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription.
- Nat Commun. 2012 Jun 6;3:886. doi: 10.1038/ncomms1878.(PMID 22673913)
- 박홍재 : King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D.
- Computational design of self-assembling protein nanomaterials with atomic level accuracy.
- Science. 2012 Jun 1;336(6085):1171-4.(PMID 22654060)
- 남지희: Vikas Rao Pejaver, Heewook Lee, and Sun Kim.
- Gene Cluster Prediction and Its Application to Genome Annotation.
- 2011. Protein Function Prediction for Omics Era pp. 35-54
- 6-8-2012
- 노한성 : The Tomato Genome Consortium
- The tomato genome sequence provides insights into flesh fruit evolution
- 2012, Nature
- 이세영 : Simon Auslander, David Auslander, Marius Muller, Markus Wieland & Martin Fussenegger
- Programmable single-cell mammalian biocomputers
- 2012, Nature
- 김병호 : Siying Ma, Nicholas Tang and Jingdong Tian
- DNA synthesis, assembly and applications in sythetic biology
- 2012, Nature (PMID 22633067 )
- 5-30-2012
- 고혁진 : Li H, Opgenorth PH, Wernick DG, Rogers S, Wu TY, Higashide W, Malati P, Huo YX, Cho KM, Liao JC
- Integrated electromicrobial conversion of CO2 to higher alcohols.
- 2012. Science.( PMID 22461604)
- 남지희: Vikas Rao Pejaver, Heewook Lee, and Sun Kim.
- Gene Cluster Prediction and Its Application to Genome Annotation.
- 2011. Protein Function Prediction for Omics Era pp. 35-54
- 고아름 : Slusarczyk AL, Lin A, Weiss R.
- Foundations for the design and implementation of synthetic genetic circuits.
- 2012. NATURE REVIEWS GENETICS. (PMID 22596318)
- 민병남 : John W. Davey, Paul A. Hohenlohe, Paul D. Etter, Jason Q. Boone, Julian M. Catchen and Mark L. Blaxter
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- 2011. NATURE RIVEWS GENETICS. PMID:21681211
- 박홍재 :Jay Shendure & Hanlee Ji
- Next-generation DNA sequencing
- 2008. Nature Biotechnology. doi:10.1038/nbt1486
- 5-23-2012
- 고혁진 : Li H, Opgenorth PH, Wernick DG, Rogers S, Wu TY, Higashide W, Malati P, Huo YX, Cho KM, Liao JC
- Integrated electromicrobial conversion of CO2 to higher alcohols.
- 2012. Science. (PMID 22461604)
- 김병호 : Lee CK, Araki N, Sowersby DS, Lewis LK.
- Factors affecting chemical-based purification of DNA from Saccharomyces cerevisiae.
- 2011.Yeast. (PMID 22134898)
- 노한성: K?nig J, Zarnack K, Luscombe NM, Ule J.
- Protein?RNA interactions: new genomic technologies and perspectives.
- 2012. Nature Reviews Genetics. (PMID 22251872)
- 5-17-2012
- 이세영 : Wang T, Ma X, Zhu H, Li A, Du G, Chen J
- Available methods for assembling expression cassettes for synthetic biology.2012. Appl Microbiol Biotechnol.(PMID 22311648)
- 남지희: Vikas Rao Pejaver, Heewook Lee, and Sun Kim.
- Gene Cluster Prediction and Its Application to Genome Annotation.2011. Protein Function Prediction for Omics Era pp. 35-54
- 고아름 : Sinha S, Redfield RJ.Natural DNA Uptake by Escherichia coli.2012. PLoS One. (PMID 22532864)
- 5-10-2012
- 고혁진 : Jun Fu, et. al.Full-length RecE enhances linear-linear homologous recombination and facilitates direct cloning for bioprospecting.
- 2012. Nature Biotechnology doi:10.1038/nbt.2183(PMID 22544021)
- 노한성 : Schraga Schwartz, Ram Oren, Gil Ast.Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads.
- 2011. PLoS ONE. PMID: 21304912(PMID 21304912)
- 5-3-2012
- 김병호 Zerbino DR, Paten B, Haussler D. Integrating genomes. 2012. Science. (PMID 22499938)
- 남지희 Vikas Rao Pejaver, Heewook Lee, and Sun Kim. Gene Cluster Prediction and Its Application to Genome Annotation.
- 4-26-2012
- 고아름:Rice KC, Bayles KW. Molecular control of bacterial death and lysis. 2008. Microbiol Mol Biol Rev. (PMID 18322035)
- 이세영:Callura JM, Cantor CR, Collins JJ. Genetic switchboard for synthetic biology applications. 2012. Proc Natl Acad Sci U S A. (PMID 22454498)
- 김병호:Tsvetanova B. et al. Genetic assembly tools for synthetic biology. 2011. Methods Enzymol. (PMID 21601684)
- 4-19-2012
- 박홍재 Synthetic biology: applications come of age. PMID 20395970
- 노한성 Insights into the bovine rumen plasmidome. PMID 22431592
- 4-10-2012
- 고혁진 Regulation of arabinose and xylose metabolism in Escherichia coli PMID 20023096
- 4-05-2012
- 민병남 Next-generation transcriptome assembly PMID 21897427
- 김병호 Minimum length of sequence homology required for in vivo cloning by homologous recombination in yeast PMID 9339466
- 김병호 Genetic assembly tools for synthetic biology PMID 21601684
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