Linux cluster
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+ | ==Parallel computing== | ||
[[image:panpyro.jpg|thumb|100px|right|panpyro 파이숭이]] | [[image:panpyro.jpg|thumb|100px|right|panpyro 파이숭이]] | ||
+ | ===MEME=== | ||
+ | *[http://biowulf.nih.gov/apps/meme.html parallel meme] | ||
+ | *[http://linuxinfo.physik.hu-berlin.de/pbs.html assigning nodes & cores] | ||
+ | *[http://www.clusterresources.com/torquedocs21/users/2.1jobsubmission.shtml#nodeExamples qsub node examples] | ||
+ | |||
==Programs Installed== | ==Programs Installed== | ||
===Bin directory (/home/tools)=== | ===Bin directory (/home/tools)=== |
Revision as of 15:12, 15 May 2009
Contents |
Parallel computing
MEME
Programs Installed
Bin directory (/home/tools)
- Statistical Packages
- R-2.8.1
- assembly packages
- amos
- EMBOSS(/usr/local/share/EMBOSS)
- EULER ( ?? )
- ab initio assembly
- ARACHNE 3.2
- WGS
- de novo
- de Bruijn graphs
- velvet
- abyss 1.0.5
- suffix tree-based approach
- QSRA
- SSAKE
- overlap-layout-consensus
- edena
- ??
- SHARCGS
- comparative
- maq 0.7.1
- realigner
- SOAPaligner
- manatee(requir setting DIR)
- iprscan
- BLAST
Modules
- Python modules
- biopython
- pyrex
- numpy
- Rpy ( RHOME problem)
- Perl modules