Structural phylogeny
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(Created page with '==Concept== *Protein structures (3D) were parsed into a finite number of structural alphabets *Using these '''structural alphabets''', identify meaning structural words.. **Frequ…')
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(Created page with '==Concept== *Protein structures (3D) were parsed into a finite number of structural alphabets *Using these '''structural alphabets''', identify meaning structural words.. **Frequ…')
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Revision as of 02:52, 1 July 2010
Contents |
Concept
- Protein structures (3D) were parsed into a finite number of structural alphabets
- Using these structural alphabets, identify meaning structural words..
- Frequent structural words (motifs?) and popular sentences (super secondary structures?)
- Using 'words to relate molecules (proteins) and organismic phylogeny (genomes; book)
Procedure
Standard data set
Torsion angles
Calculation
- MMTB (python toolbox)
- DSSP (by C. Sander)
