Genome database
From CSBLwiki
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(→KEGG data) |
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*panflam: /home/gnusnah/db/genome/origin_seq | *panflam: /home/gnusnah/db/genome/origin_seq | ||
**Last update: 2011.02.06 | **Last update: 2011.02.06 | ||
| - | **Source: [http://tubic.tju.edu.cn/Ori-Finder | + | **Source: [http://tubic.tju.edu.cn/Ori-Finder Ori-Finder] |
==Whole Bacteria Genome== | ==Whole Bacteria Genome== | ||
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**Last update: 2010.11.17 | **Last update: 2010.11.17 | ||
**Source: NCBI | **Source: NCBI | ||
| + | |||
| + | ==Blast DB== | ||
| + | *nrdb | ||
| + | **panflam: /home2/gnusnah/db/nr_db | ||
| + | **Last update: 2010.08.04 | ||
| + | **Source: NCBI | ||
| + | |||
| + | ==KEGG data== | ||
| + | *pathway, genes, KO | ||
| + | **panflam: /home2/gnusnah/db/KEGG | ||
| + | **Last update: 2011.07.27 | ||
| + | **Source: KEGG | ||
| + | **Download script: /home2/gnusnah/db/SOAPpy_KEGG.py orgname | ||
Latest revision as of 07:58, 27 July 2011
Contents |
Gene and Genome database
- panflam: /home/gnusnah/db/genome/origin_seq
- Last update: 2011.02.06
- Source: Ori-Finder
Whole Bacteria Genome
- panflam: /home/gnusnah/db/genome/genomes/Bacteria
- Last update: 2010.11.17
- Source: NCBI
Blast DB
- nrdb
- panflam: /home2/gnusnah/db/nr_db
- Last update: 2010.08.04
- Source: NCBI
KEGG data
- pathway, genes, KO
- panflam: /home2/gnusnah/db/KEGG
- Last update: 2011.07.27
- Source: KEGG
- Download script: /home2/gnusnah/db/SOAPpy_KEGG.py orgname
