Genome scale network model

From CSBLwiki

Revision as of 15:29, 21 July 2011 (view source) Igchoi (Talk | contribs) ← Older edit		Revision as of 15:30, 21 July 2011 (view source) Igchoi (Talk | contribs) Newer edit →
Line 2:		Line 2:
	:Graph Visualization		:Graph Visualization
-	;<http://www.bioconductor.org/install/ Bioconductor Install>	+	;[http://www.bioconductor.org/install/ Bioconductor Install]
-	;;<http://www.bioconductor.org/packages/release/bioc/ BioC packages>	+	;;[http://www.bioconductor.org/packages/release/bioc/ BioC packages]
-	;<http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html Rgraphviz>	+	;[http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html Rgraphviz]
-	;<http://www.bioconductor.org/packages/release/bioc/html/rsbml.html rsbml>	+	;[http://www.bioconductor.org/packages/release/bioc/html/rsbml.html rsbml]
-	;<http://cran.r-project.org/web/packages/BiGGR/index.html BiGGR>	+	;[http://cran.r-project.org/web/packages/BiGGR/index.html BiGGR]
	<pre>		<pre>
	source("http://bioconductor.org/biocLite.R")		source("http://bioconductor.org/biocLite.R")

---

Revision as of 15:30, 21 July 2011

E-book: Methods in bioengineering : systems analysis of biological networks

Graph Visualization

Bioconductor Install

BioC packages

Rgraphviz

rsbml

BiGGR

source("http://bioconductor.org/biocLite.R")
## requirement: libsbml, graphviz library
biocLite("rsbml","Rgraphviz","BiGGR",type="source") # compiling from source code
###
### visualization of stoichiometric matrix
###
library("BiGGR") # <- related packages automatically ON (graph, igraph,...)
load("shewanella.rdata")