Genome scale network model
From CSBLwiki
(Difference between revisions)
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;[http://library.korea.ac.kr/search/detail/EBKTOT000018883170?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=Methods+in+bioengineering%3A+systems+analysis+of+biological+networks+_A_tn_0=m%2F E-book: Methods in bioengineering : systems analysis of biological networks] | ;[http://library.korea.ac.kr/search/detail/EBKTOT000018883170?mainLink=/search/tot&briefLink=/search/tot/result?si=TOTAL_A_st=KWRD_A_wsActivity=0_A_acUsed=1_A_q=Methods+in+bioengineering%3A+systems+analysis+of+biological+networks+_A_tn_0=m%2F E-book: Methods in bioengineering : systems analysis of biological networks] | ||
| - | + | ;Graph Visualization | |
| - | + | :[http://www.bioconductor.org/install/ Bioconductor Install] | |
| - | + | ::[http://www.bioconductor.org/packages/release/bioc/ BioC packages] | |
| - | + | :[http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html Rgraphviz] | |
| - | + | :[http://www.bioconductor.org/packages/release/bioc/html/rsbml.html rsbml] | |
| - | + | :[http://cran.r-project.org/web/packages/BiGGR/index.html BiGGR] | |
<pre> | <pre> | ||
source("http://bioconductor.org/biocLite.R") | source("http://bioconductor.org/biocLite.R") | ||
Revision as of 15:31, 21 July 2011
- Graph Visualization
- Bioconductor Install
- Rgraphviz
- rsbml
- BiGGR
source("http://bioconductor.org/biocLite.R")
## requirement: libsbml, graphviz library
biocLite("rsbml","Rgraphviz","BiGGR",type="source") # compiling from source code
###
### visualization of stoichiometric matrix
###
library("BiGGR") # <- related packages automatically ON (graph, igraph,...)
load("shewanella.rdata")
