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| | == Resource for Hansung == | | == Resource for Hansung == |
| - | *link[[ResourceforHS]] | + | *[[ResourceforHS]] |
| - | *[http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download OMIM download]
| + | |
| - | *[http://www.nd.edu/~alb/Publication06/145-HumanDisease_PNAS-14My07-Proc/Suppl/ Human disease network raw data (물리학과 고광일 교수제공)]
| + | |
| - | *[http://www.diveintopython.org/ Dive into Python (Book)]
| + | |
| - | *[http://networkx.lanl.gov/wiki NetworkX Python network analysis tool]
| + | |
| - | **[[color code]]
| + | |
| - | **[[node labeling]]
| + | |
| - | *Python: multiple key values in 'dict' type [http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52219 cookbook]
| + | |
| - | *python 대소문자 전환 [http://mwultong.blogspot.com/2006/12/python-uppercase-lowercase-capitalize.html module : string]
| + | |
| - | ----
| + | |
| - | *한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)
| + | |
| - | ----
| + | |
| - | *Gene Ontology Data
| + | |
| - | **Human GO annotation [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.goa_human.gz?rev=HEAD Human GO Download]
| + | |
| - | **GO mapping [http://compbio.korea.ac.kr/~igchoi/goaslim.map GOA slim mapping]
| + | |
| - | **GO Slim [http://compbio.korea.ac.kr/~igchoi/goslim_goa.go GO Slim categories]
| + | |
| - | **Gene association DB data ([http://geneticassociationdb.nih.gov/cgi-bin/index.cgi NIH]) [http://compbio.korea.ac.kr/~igchoi/all.xls.zip Download]
| + | |
| - | **먼저 molecular function만 고려해 보거라
| + | |
| - | **고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자
| + | |
| - | ***Conversion of Uniprot id to Unigene id & GO assignment [http://compbio.korea.ac.kr/~igchoi/p2g2go.tar.gz p2g2go.tar.gz]
| + | |
| - | **Minimum Spanning Tree - 전체 네트워크 그래프에서 minimum spanning tree를 구해볼것
| + | |
| - | **Clique - 전체 네트워크 그래프에서 Cliques들을 구해볼것
| + | |
| - | ----
| + | |
| - | *Cytoscape[http://www.cytoscape.org/ homepage]
| + | |
| - | **[http://www.cytoscape.org/manual/Cytoscape2_5Manual.html manual]
| + | |
| - | ----
| + | |
| - | *EST analysis
| + | |
| - | **Hitchhiker's guide for EST anlysis ([[media:estguide.pdf|PDF]])
| + | |
| - | ----
| + | |
| - | *wiki [http://wiki.kldp.org/wiki.php/%C0%A7%C5%B0%BB%E7%BF%EB%B9%FD manual]
| + | |
| | | | |
| | ==Reporte Progress== | | ==Reporte Progress== |
