Hanseong Roh

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	== Resource for Hansung ==		== Resource for Hansung ==
		+	*link[[ResourceforHS]]
	*[http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download OMIM download]		*[http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download OMIM download]
	*[http://www.nd.edu/~alb/Publication06/145-HumanDisease_PNAS-14My07-Proc/Suppl/ Human disease network raw data (물리학과 고광일 교수제공)]		*[http://www.nd.edu/~alb/Publication06/145-HumanDisease_PNAS-14My07-Proc/Suppl/ Human disease network raw data (물리학과 고광일 교수제공)]

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Revision as of 00:44, 3 April 2009

Contents 1 Introduction 2 Research Interests 3 Resource for Hansung 4 Reporte Progress 5 For Fun

Introduction

• cyworld homepage
• Experiment blog

Research Interests

• SNP란?[1]
• iGEM catalog[2]
• assembly Genome1

Resource for Hansung

• linkResourceforHS
• OMIM download
• Human disease network raw data (물리학과 고광일 교수제공)
• Dive into Python (Book)
• NetworkX Python network analysis tool
  • color code
  • node labeling
• Python: multiple key values in 'dict' type cookbook
• python 대소문자 전환 module : string

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• 한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)

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• Gene Ontology Data
  • Human GO annotation Human GO Download
  • GO mapping GOA slim mapping
  • GO Slim GO Slim categories
  • Gene association DB data (NIH) Download
  • 먼저 molecular function만 고려해 보거라
  • 고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자
    • Conversion of Uniprot id to Unigene id & GO assignment p2g2go.tar.gz
  • Minimum Spanning Tree - 전체 네트워크 그래프에서 minimum spanning tree를 구해볼것
  • Clique - 전체 네트워크 그래프에서 Cliques들을 구해볼것

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• Cytoscapehomepage
  • manual

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• EST analysis
  • Hitchhiker's guide for EST anlysis (PDF)

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• wiki manual

Reporte Progress

GAD

GAD analysis

GAD-2

ontology

For Fun

Win XP Games's easter egg