Hanseong Roh

From CSBLwiki

Contents 1 Introduction 2 Research Interests 3 Resource for Hansung 4 Reporte Progress 5 WikiTests

Introduction

Research Interests

• SNP란?[1]

• iGEM catalog[2]

Resource for Hansung

• OMIM download
• Human disease network raw data (물리학과 고광일 교수제공)
• Dive into Python (Book)
• NetworkX Python network analysis tool
  • color code
  • node labeling
• Python: multiple key values in 'dict' type cookbook

---

• 한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)

---

• Gene Ontology Data
  • Human GO annotation Human GO Download
  • GO mapping GOA slim mapping
  • GO Slim GO Slim categories
  • Gene association DB data (NIH) Download
  • 먼저 molecular function만 고려해 보거라
  • 고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자

Reporte Progress

WikiTests

%molecular_function ; GO:0003674
 %antioxidant activity ; GO:0016209
 %binding ; GO:0005488 ; synonym:ligand
  %nucleic acid binding ; GO:0003676
  %protein binding ; GO:0005515
 %catalytic activity ; GO:0003824
  %aromatase activity ; GO:0008402 ; synonym:cytochrome P450 CYP19 ; synonym:estrogen synthetase
  %helicase activity ; GO:0004386 ; Reactome:109879 ; Reactome:111307 ; Reactome:117604 ; Reactome:117605 ; Reactome:120688 ; Reactome:72598 ; Reactome:72599
  %hydrolase activity ; GO:0016787 ; EC:3.-.-.-
  %integrase activity ; GO:0008907
  %isomerase activity ; GO:0016853 ; EC:5.-.-.-
  %kinase activity ; GO:0016301 ; Reactome:113431 ; Reactome:113433 ; Reactome:114246 ; Reactome:115027 ; Reactome:115715 ; Reactome:115932 ; Reactome:115944 ; Reactome:115947 ; Reactome:115951 ; Reactome:115974 ; Reactome:115991 ; Reactome:116605 ; Reactome:117491 ; Reactome:118310 ; Reactome:118568 ; Reactome:118583 ; Reactome:118586 ; Reactome:118589 ; Reactome:118596 ; Reactome:118617 ; Reactome:118965 ; Reactome:119356 ; Reactome:120179 ; Reactome:120930 ; Reactome:121183 ; Reactome:121192 ; Reactome:121216 ; Reactome:121239 ; Reactome:121274 ; Reactome:121543 ; Reactome:122577 ; Reactome:123125 ; Reactome:123301 ; Reactome:123309 ; Reactome:123312 ; Reactome:123316 ; Reactome:123331 ; Reactome:124636 ; Reactome:125197 ; Reactome:125408 ; Reactome:125423 ; Reactome:125426 ; Reactome:125441 ; Reactome:68385 ; Reactome:68401 ; Reactome:69194 ; Reactome:69222 ; Reactome:69246 ; Reactome:69254 ; Reactome:69603 ; Reactome:69607 ; Reactome:69716 ; Reactome:69904 ; Reactome:69913 ; Reactome:75047 ; Reactome:75051 ; Reactome:75052 ; Reactome:75053 ; Reactome:75054 ; Reactome:75225 ; Reactome:75371 ; Reactome:75808 ; Reactome:75819 ; Reactome:83536 ; synonym:phosphokinase
  %ligase activity ; GO:0016874 ; EC:6.-.-.-
  %lyase activity ; GO:0016829 ; EC:4.-.-.-
  %oxidoreductase activity ; GO:0016491 ; EC:1.-.-.- ; synonym:redox activity
  %transferase activity ; GO:0016740 ; EC:2.-.-.-
 %chaperone regulator activity ; GO:0030188
 %enzyme regulator activity ; GO:0030234 ; synonym:enzyme modulator
 %molecular_function unknown ; GO:0005554
 %motor activity ; GO:0003774
 %signal transducer activity ; GO:0004871
  %receptor activity ; GO:0004872
 %structural molecule activity ; GO:0005198
 %transcription regulator activity ; GO:0030528
 %translation regulator activity ; GO:0045182
 %transporter activity ; GO:0005215
  %carrier activity ; GO:0005386 ; synonym:carrier type transporter
  %channel or pore class transporter activity ; GO:0015267 ; TC:1.-.-.-.- ; synonym:channel/pore class transporter activity
  %electron transporter activity ; GO:0005489
  %ion transporter activity ; GO:0015075
  %permease activity ; GO:0015646
  %protein transporter activity ; GO:0008565, GO:0015463 ; synonym:enzyme transporter activity