Linux cluster

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Revision as of 13:47, 11 April 2009 (view source) Csbl (Talk | contribs) (→Programs Installed) ← Older edit		Revision as of 14:09, 11 April 2009 (view source) Csbl (Talk | contribs) (→Bin directory (/home/tools)) Newer edit →
Line 6:		Line 6:
	*assembly packages		*assembly packages
	**amos		**amos
-	**EMBOSS(/usr/local/share/EMBOSS	+	**EMBOSS(/usr/local/share/EMBOSS)
	**EULER ( ?? )		**EULER ( ?? )
Line 22:		Line 22:
	*SOAPaligner		*SOAPaligner
-	*manatee	+	*manatee(ing...)
		+	*iprscan(ing...)
	*BLAST		*BLAST
		+
	===Modules===		===Modules===
	*Python modules		*Python modules

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Revision as of 14:09, 11 April 2009

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS)
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE

• realigner
• SOAPaligner

• manatee(ing...)
• iprscan(ing...)
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
• Perl modules