Linux cluster

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Revision as of 14:09, 11 April 2009 (view source) Csbl (Talk | contribs) (→Bin directory (/home/tools)) ← Older edit		Revision as of 14:14, 11 April 2009 (view source) Csbl (Talk | contribs) (→Modules) Newer edit →
Line 30:		Line 30:
	**biopython		**biopython
	**pyrex		**pyrex
		+	**numpy
	*Perl modules		*Perl modules

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Revision as of 14:14, 11 April 2009

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS)
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE

• realigner
• SOAPaligner

• manatee(requir setting DIR)
• iprscan(downloading...)
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
  • numpy
• Perl modules