Linux cluster

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Revision as of 14:14, 11 April 2009 (view source) Csbl (Talk | contribs) (→Modules) ← Older edit		Revision as of 14:33, 11 April 2009 (view source) Csbl (Talk | contribs) (→Programs Installed) Newer edit →
Line 3:		Line 3:
	===Bin directory (/home/tools)===		===Bin directory (/home/tools)===
	*Statistical Packages		*Statistical Packages
-	**R-2.8.1	+	**R-2.8.1
	*assembly packages		*assembly packages
	**amos		**amos
Line 31:		Line 31:
	**pyrex		**pyrex
	**numpy		**numpy
		+	**Rpy ( RHOME problem)
	*Perl modules		*Perl modules

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Revision as of 14:33, 11 April 2009

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS)
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE

• realigner
• SOAPaligner

• manatee(requir setting DIR)
• iprscan(downloading...)
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
  • numpy
  • Rpy ( RHOME problem)
• Perl modules