Linux cluster
From CSBLwiki
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*[http://linuxinfo.physik.hu-berlin.de/pbs.html assigning nodes & cores] | *[http://linuxinfo.physik.hu-berlin.de/pbs.html assigning nodes & cores] | ||
*[http://www.clusterresources.com/torquedocs21/users/2.1jobsubmission.shtml#nodeExamples qsub node examples] | *[http://www.clusterresources.com/torquedocs21/users/2.1jobsubmission.shtml#nodeExamples qsub node examples] | ||
- | *[http://compbio.korea.ac.kr/wiki/ | + | *[http://compbio.korea.ac.kr/wiki/images/c/cb/Parallel_scripts.zip Parallel scripts] |
==Programs Installed== | ==Programs Installed== |
Revision as of 07:57, 16 May 2009
Contents |
Parallel computing
MEME
Programs Installed
Bin directory (/home/tools)
- Statistical Packages
- R-2.8.1
- assembly packages
- amos
- EMBOSS(/usr/local/share/EMBOSS)
- EULER ( ?? )
- ab initio assembly
- ARACHNE 3.2
- WGS
- de novo
- de Bruijn graphs
- velvet
- abyss 1.0.5
- suffix tree-based approach
- QSRA
- SSAKE
- overlap-layout-consensus
- edena
- ??
- SHARCGS
- comparative
- maq 0.7.1
- realigner
- SOAPaligner
- manatee(requir setting DIR)
- iprscan
- BLAST
Modules
- Python modules
- biopython
- pyrex
- numpy
- Rpy ( RHOME problem)
- Perl modules