Linux cluster

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Revision as of 14:33, 11 April 2009 (view source) Csbl (Talk | contribs) (→Programs Installed) ← Older edit		Revision as of 14:49, 11 April 2009 (view source) Csbl (Talk | contribs) (→Programs Installed) Newer edit →
Line 18:		Line 18:
	**QSRA		**QSRA
	**SSAKE		**SSAKE
		+	**SHARCGS
		+	**abyss 1.0.5
		+
		+	*comparative
		+	**maq 0.7.1
		+
	*realigner		*realigner

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Revision as of 14:49, 11 April 2009

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS)
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE
  • SHARCGS
  • abyss 1.0.5

• comparative
  • maq 0.7.1

• realigner
• SOAPaligner

• manatee(requir setting DIR)
• iprscan(downloading...)
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
  • numpy
  • Rpy ( RHOME problem)
• Perl modules