Linux cluster

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Revision as of 02:22, 28 March 2009 (view source) Igchoi (Talk | contribs) ← Older edit		Revision as of 13:47, 11 April 2009 (view source) Csbl (Talk | contribs) (→Programs Installed) Newer edit →
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	*Statistical Packages		*Statistical Packages
	**R-2.8.1		**R-2.8.1
		+	*assembly packages
		+	**amos
		+	**EMBOSS(/usr/local/share/EMBOSS
		+	**EULER ( ?? )
		+
		+	*ab initio assembly
		+	**ARACHNE 3.2
		+	**WGS
		+
		+	*de novo
		+	**edena
		+	**velvet
		+	**QSRA
		+	**SSAKE
		+
		+	*realigner
		+	*SOAPaligner
		+
		+	*manatee
		+	*BLAST
	===Modules===		===Modules===
	*Python modules		*Python modules
		+	**biopython
		+	**pyrex
	*Perl modules		*Perl modules

---

Revision as of 13:47, 11 April 2009

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE

• realigner
• SOAPaligner

• manatee
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
• Perl modules