Linux cluster

From CSBLwiki

Programs Installed

Bin directory (/home/tools)

• Statistical Packages
  • R-2.8.1
• assembly packages
  • amos
  • EMBOSS(/usr/local/share/EMBOSS)
  • EULER ( ?? )

• ab initio assembly
  • ARACHNE 3.2
  • WGS

• de novo
  • edena
  • velvet
  • QSRA
  • SSAKE

• realigner
• SOAPaligner

• manatee(requir setting DIR)
• iprscan(downloading...)
• BLAST

Modules

• Python modules
  • biopython
  • pyrex
  • numpy
• Perl modules