Linux cluster
From CSBLwiki
Programs Installed
Bin directory (/home/tools)
- Statistical Packages
- R-2.8.1
- assembly packages
- amos
- EMBOSS(/usr/local/share/EMBOSS)
- EULER ( ?? )
- ab initio assembly
- ARACHNE 3.2
- WGS
- de novo
- de Bruijn graphs
- velvet
- abyss 1.0.5
- suffix tree-based approach
- QSRA
- SSAKE
- overlap-layout-consensus
- edena
- ??
- SHARCGS
- comparative
- maq 0.7.1
- realigner
- SOAPaligner
- manatee(requir setting DIR)
- iprscan
- BLAST
Modules
- Python modules
- biopython
- pyrex
- numpy
- Rpy ( RHOME problem)
- Perl modules