From CSBLwiki
Concept
Procedure
Standard data set
Torsion angles
images to be posted...
Mesostate
Mesostate - it contains an error www.pnas.org/content/102/45/16227/F1.large.jpg
Calculation
- Following tools can be used to calculate torsion angles of backbones
- MMTK (python molecular modeling toolkit)
- DSSP (by C. Sander)
Alphabet assignment
Profiling
- Normalization?
- Distance metric?
Applications
Status(result)
- Using R to check the data
# R script
> print(bins)
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 90545 18116 83067 120228 284531 1369188
[2,] 100305 84717 3685965 485872 653175 2066098
[3,] 4849 86683 1565006 5826 39358 294463
[4,] 23516 9348 2594 135671 25882 3456
[5,] 54491 12777 109935 234363 17244 41903
[6,] 35495 3524 13284 6641 5944 34984
References
Error fetching PMID 19188606:
- Error fetching PMID 19188606: [FPP]