Newbler
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(Difference between revisions)
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**gapResolution: can cover this problem by local assembly. | **gapResolution: can cover this problem by local assembly. | ||
**We can manually check with 454PairStatus.txt file. | **We can manually check with 454PairStatus.txt file. | ||
+ | **It is important to know which contig is multicopy and how many it(orgarnism) has. |
Revision as of 01:48, 3 November 2010
Tips for Newbler de novo assembler
- 454Scaffolds: Contigs with gaps or contigs longer than 2000bp
- 454AllContigs: If there are multi copy contigs, the Newbler make them island.
- gapResolution: can cover this problem by local assembly.
- We can manually check with 454PairStatus.txt file.
- It is important to know which contig is multicopy and how many it(orgarnism) has.