Research topics

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Revision as of 04:27, 16 March 2011 (view source) Igchoi (Talk | contribs) (→Evolutionary perspective) ← Older edit		Revision as of 04:28, 16 March 2011 (view source) Igchoi (Talk | contribs) (→Synthetic Biology) Newer edit →
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	==[[Synthetic Biology]]==		==[[Synthetic Biology]]==
	===iGEM 2010===		===iGEM 2010===
-	*[http://2010.igem.org/Team:Korea_U_Seoul Team - Korea_U_Seoul]	+	;[http://2010.igem.org/Team:Korea_U_Seoul Team - Korea_U_Seoul]
	===iGEM 2009===		===iGEM 2009===
-	*[http://2009.igem.org/Team:KU_Seoul Team - KU_Seoul] [[image:igem2009synbio.png|thumb|right|KU_Seoul]]	+	;[http://2009.igem.org/Team:KU_Seoul Team - KU_Seoul] [[image:igem2009synbio.png|thumb|right|KU_Seoul]]
	===Protein Engineering===		===Protein Engineering===
-	*[[aryl acylamidase]]	+	;[[aryl acylamidase]]
	===Bioenergy===		===Bioenergy===
-	*Exploring the [http://www.cazy.org CAZy]: we are developing new CBM (Carbohydrate Binding Modules) classification system: <b>3D-Map</b>	+	;Exploring the [http://www.cazy.org CAZy]: we are developing new CBM (Carbohydrate Binding Modules) classification system: <b>3D-Map</b>
-	*'''CA'''rbohydrate '''R'''elated '''D'''omain database - [[CARD DB]]	+	:'''CA'''rbohydrate '''R'''elated '''D'''omain database - [[CARD DB]]
-	**'''P'''rotein '''D'''omains for '''B'''iomass '''D'''econstruction - [[PDBD DB]]	+	:'''P'''rotein '''D'''omains for '''B'''iomass '''D'''econstruction - [[PDBD DB]]
-	*Biomass deconstruction	+	;Biomass deconstruction
-	**[[Land biomass]]	+	:[[Land biomass]]
-	**[[Marine biomass]]	+	:[[Marine biomass]]
-	***[[Agar]]	+	::[[Agar]]
-	**Related [[Enzymes]]	+	::Related [[Enzymes]]
-	**Related [[Microbes]]	+	::Related [[Microbes]]
	===Metabolic Engineering===		===Metabolic Engineering===
-	*Cellulose utilization	+	;Cellulose utilization
	==[[Genome Sequencing]]==		==[[Genome Sequencing]]==

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Revision as of 04:28, 16 March 2011

Contents 1 Evolutionary perspective 2 Synthetic Biology 2.1 iGEM 2010 2.2 iGEM 2009 2.3 Protein Engineering 2.4 Bioenergy 2.5 Metabolic Engineering 3 Genome Sequencing 3.1 Project#1 3.2 Project#2 3.3 softwares 4 Network biology 4.1 Protein-Protein Interactions 4.2 Human Disease Network

Evolutionary perspective

Nothing in biology makes sense except in the light of evolution - T. Dobzhansky

SNP analysis & Molecular population genetics

Phylogenomics (comparative genomics)

Evolution of protein domain families

Horizontal Gene Transfer (HGT)

Synthetic Biology

iGEM 2010

Team - Korea_U_Seoul

iGEM 2009

Team - KU_Seoul

KU_Seoul

Protein Engineering

aryl acylamidase

Bioenergy

Exploring the CAZy

we are developing new CBM (Carbohydrate Binding Modules) classification system: 3D-Map

CArbohydrate Related Domain database - CARD DB

Protein Domains for Biomass Deconstruction - PDBD DB

Biomass deconstruction

Land biomass

Marine biomass

Agar

Related Enzymes

Related Microbes

Metabolic Engineering

Cellulose utilization

Genome Sequencing

Project#1

• Status

Project#2

• Status

softwares

• Conversion among formats fa_all2std.pl

Network biology

Protein-Protein Interactions

Human Disease Network

• references

1. What is a scale-free network? Sci. Am. (2003) Barabasi
2. What is network biology? Nat. Rev. Genet.(2005) Barabasi