Research topics

From CSBLwiki

Contents 1 Computational Genomics by Next Generation Sequencing (NGS) 2 Evolutionary perspective 3 Synthetic Biology 3.1 iGEM 3.2 Protein Engineering 3.3 Bioenergy 3.4 Metabolic Engineering 4 Genome Sequencing 4.1 Project#1 4.2 Project#2 4.3 softwares 5 Network biology 5.1 Protein-Protein Interactions 5.2 Human Disease Network

Computational Genomics by Next Generation Sequencing (NGS)

Evolutionary perspective

Nothing in biology makes sense except in the light of evolution - T. Dobzhansky

SNP analysis & Molecular population genetics

Phylogenomics (comparative genomics)

Evolution of protein domain families

Horizontal Gene Transfer (HGT)

Synthetic Biology

iGEM

Protein Engineering

aryl acylamidase

Bioenergy

Exploring the CAZy

we are developing new CBM (Carbohydrate Binding Modules) classification system: 3D-Map

CArbohydrate Related Domain database - CARD DB

Protein Domains for Biomass Deconstruction - PDBD DB

Biomass deconstruction

Land biomass

Marine biomass

Agar

Related Enzymes

Related Microbes

Metabolic Engineering

Cellulose utilization

Genome Sequencing

Project#1

• Status

Project#2

• Status

softwares

• Conversion among formats fa_all2std.pl

Network biology

Protein-Protein Interactions

Human Disease Network

• references

1. What is a scale-free network? Sci. Am. (2003) Barabasi
2. What is network biology? Nat. Rev. Genet.(2005) Barabasi