ResourceforHS

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Revision as of 02:49, 8 July 2011 (view source) Gnusnah (Talk | contribs) ← Older edit		Revision as of 02:37, 14 July 2011 (view source) Gnusnah (Talk | contribs) Newer edit →
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	[http://pathogenomics.bham.ac.uk/blog/2011/05/first-look-at-ion-torrent-data-de-novo-assembly/ Ion torrent]		[http://pathogenomics.bham.ac.uk/blog/2011/05/first-look-at-ion-torrent-data-de-novo-assembly/ Ion torrent]
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		+	*Bibliography
		+	http://www.zotero.org/

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Revision as of 02:37, 14 July 2011

OMIM download

• Human disease network raw data (물리학과 고광일 교수제공)
• Dive into Python (Book)
• NetworkX Python network analysis tool
  • color code
  • node labeling
• Python: multiple key values in 'dict' type cookbook
• python 대소문자 전환 module : string

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• 한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)

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• Gene Ontology Data
  • Human GO annotation Human GO Download
  • GO mapping GOA slim mapping
  • GO Slim GO Slim categories
  • Gene association DB data (NIH) Download
  • 먼저 molecular function만 고려해 보거라
  • 고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자
    • Conversion of Uniprot id to Unigene id & GO assignment p2g2go.tar.gz
  • Minimum Spanning Tree - 전체 네트워크 그래프에서 minimum spanning tree를 구해볼것
  • Clique - 전체 네트워크 그래프에서 Cliques들을 구해볼것

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• Cytoscapehomepage
  • manual

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• EST analysis
  • Hitchhiker's guide for EST anlysis (PDF)

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• wiki manual

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• VIM
  • ab1파일 수정 :%s/\v\s+[0-9]+\s+[0-9]+\s+[0-9]+//

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NFS 연결

• panflam에서 버팔로 NAS에 연결
• connect2NFS

#!/bin/sh
sudo mount -t cifs -o user=gnusnah,password= //163.152.25.185/gnusnah /home/gnusnah/NFS/

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• Prezi - beautiful presentation tool

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Ncbi rank taxa

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Genome database

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Remained

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(pseudouridine synthase[Protein Name] OR (pseudouridine[All Fields] AND synthase[All Fields])) AND "Homo sapiens"[porgn] NOT "mitochondrial"[All Fields]

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Ion torrent

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• Bibliography

http://www.zotero.org/