ResourceforHS

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[http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download OMIM download]
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*[http://www.nd.edu/~alb/Publication06/145-HumanDisease_PNAS-14My07-Proc/Suppl/ Human disease network raw data (물리학과 고광일 교수제공)]
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*[http://www.diveintopython.org/ Dive into Python (Book)]
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*[http://networkx.lanl.gov/wiki NetworkX Python network analysis tool]
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**[[color code]]
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**[[node labeling]]
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*Python: multiple key values in 'dict' type [http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52219 cookbook]
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*python 대소문자 전환 [http://mwultong.blogspot.com/2006/12/python-uppercase-lowercase-capitalize.html module : string]
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----
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*한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)
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----
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*Gene Ontology Data
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**Human GO annotation [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.goa_human.gz?rev=HEAD Human GO Download]
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**GO mapping [http://compbio.korea.ac.kr/~igchoi/goaslim.map GOA slim mapping]
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**GO Slim [http://compbio.korea.ac.kr/~igchoi/goslim_goa.go GO Slim categories]
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**Gene association DB data ([http://geneticassociationdb.nih.gov/cgi-bin/index.cgi NIH]) [http://compbio.korea.ac.kr/~igchoi/all.xls.zip Download]
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**먼저 molecular function만 고려해 보거라
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**고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자
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***Conversion of Uniprot id to Unigene id & GO assignment [http://compbio.korea.ac.kr/~igchoi/p2g2go.tar.gz p2g2go.tar.gz]
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**Minimum Spanning Tree - 전체 네트워크 그래프에서 minimum spanning tree를 구해볼것
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**Clique - 전체 네트워크 그래프에서 Cliques들을 구해볼것
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----
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*Cytoscape[http://www.cytoscape.org/ homepage]
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**[http://www.cytoscape.org/manual/Cytoscape2_5Manual.html manual]
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----
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*EST analysis
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**Hitchhiker's guide for EST anlysis ([[media:estguide.pdf|PDF]])
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----
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*wiki [http://wiki.kldp.org/wiki.php/%C0%A7%C5%B0%BB%E7%BF%EB%B9%FD manual]
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----
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*VIM
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**ab1파일 수정 :%s/\v\s+[0-9]+\s+[0-9]+\s+[0-9]+//
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----
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NFS 연결
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*panflam에서 버팔로 NAS에 연결
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*connect2NFS
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<pre>
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#!/bin/sh
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sudo mount -t cifs -o user=gnusnah,password= //163.152.25.185/gnusnah /home/gnusnah/NFS/
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</pre>
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----
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*[http://prezi.com/ Prezi - beautiful presentation tool]
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----
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[[Ncbi rank taxa]]
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----
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[[Genome database]]
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----
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[[Remained]]
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----
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(pseudouridine synthase[Protein Name] OR (pseudouridine[All Fields] AND synthase[All Fields])) AND "Homo sapiens"[porgn] NOT "mitochondrial"[All Fields]
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----
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[http://pathogenomics.bham.ac.uk/blog/2011/05/first-look-at-ion-torrent-data-de-novo-assembly/ Ion torrent assembly comparison]
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----
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*Bibliography
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http://www.zotero.org/
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----
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Matplotlib
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*[http://matplotlib.sourceforge.net/api/pyplot_api.html?highlight=color#matplotlib.pyplot.colors Color Alias]
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*[http://matplotlib.sourceforge.net/api/pyplot_api.html?highlight=savefig#matplotlib.pyplot.savefig SaveFig]
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----
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[http://www.genome.jp/kegg/soap/doc/keggapi_manual.html KEGG api manual]

Latest revision as of 07:47, 27 July 2011

OMIM download

NFS 연결 

#!/bin/sh
sudo mount -t cifs -o user=gnusnah,password= //163.152.25.185/gnusnah /home/gnusnah/NFS/

Ncbi rank taxa

Genome database

Remained

(pseudouridine synthase[Protein Name] OR (pseudouridine[All Fields] AND synthase[All Fields])) AND "Homo sapiens"[porgn] NOT "mitochondrial"[All Fields]

Ion torrent assembly comparison

http://www.zotero.org/

Matplotlib

KEGG api manual

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