SB Course
From CSBLwiki
(Difference between revisions)
(→2009 Fall) |
(→2009 Fall) |
||
| Line 18: | Line 18: | ||
**''Shewanella oneidensis'' MR-1 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=son KEGG pathway map] | **''Shewanella oneidensis'' MR-1 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=son KEGG pathway map] | ||
***Lactate metabolism | ***Lactate metabolism | ||
| - | ***[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=shewanell | + | ***[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=search&term=shewanell%20AND%20keasling%5Bau%5D' PubMed] on flux analysis |
**''Saccharophagus degradans'' 2-40 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=sde KEGG pathway map] | **''Saccharophagus degradans'' 2-40 [http://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=sde KEGG pathway map] | ||
***Glucose to Lactate | ***Glucose to Lactate | ||
Revision as of 09:58, 23 October 2009
|
Biomodel database
Running SBML
- SBML softwares - guide table
- KEGG2SBML - KEGG pathway converter to SBML (written in Perl)
R-project
- R-project
- BioConductor - based on R package
Term project
2009 Fall
- Reconstructing central carbon pathways in target organims
- Shewanella oneidensis MR-1 KEGG pathway map
- Lactate metabolism
- PubMed on flux analysis
- Saccharophagus degradans 2-40 KEGG pathway map
- Glucose to Lactate
- Shewanella oneidensis MR-1 KEGG pathway map
