SB Course
From CSBLwiki
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**[http://bioconductor.org/packages/2.3/bioc/html/SBMLR.html SBMLR package] - [http://bioconductor.org/packages/2.3/bioc/vignettes/SBMLR/inst/doc/manual.pdf Manual] | **[http://bioconductor.org/packages/2.3/bioc/html/SBMLR.html SBMLR package] - [http://bioconductor.org/packages/2.3/bioc/vignettes/SBMLR/inst/doc/manual.pdf Manual] | ||
**RSBML | **RSBML | ||
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| + | ==Matlab== | ||
| + | *Systems biology toolbox | ||
==Term project== | ==Term project== | ||
Revision as of 10:01, 23 October 2009
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Biomodel database
Running SBML
- SBML softwares - guide table
- KEGG2SBML - KEGG pathway converter to SBML (written in Perl)
R-project
- R package
- BioConductor - based on R package
- SBMLR package - Manual
- RSBML
Matlab
- Systems biology toolbox
Term project
2009 Fall
- Reconstructing central carbon pathways in target organims
- Shewanella oneidensis MR-1 KEGG pathway map
- Lactate metabolism
- PubMed on flux analysis
- Saccharophagus degradans 2-40 KEGG pathway map
- Glucose to Lactate
- Shewanella oneidensis MR-1 KEGG pathway map
