Structural phylogeny

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==Concept==
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*Protein structures (3D) were parsed into a finite number of structural alphabets
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*Using these '''structural alphabets''', identify meaning structural words..
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**Frequent structural words (motifs?) and popular sentences (super secondary structures?)
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*Using '''words'' to relate molecules (proteins) and organismic phylogeny (genomes; book)
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==Procedure==
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===Standard data set===
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*[http://scop.berkeley.edu the SCOP DB]
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===Torsion angles===
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====Calculation====
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*MMTB (python toolbox)
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*[http://swift.cmbi.ru.nl/gv/dssp/ DSSP] (by C. Sander)
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==Status(result)==
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Latest revision as of 03:21, 9 July 2010

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