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| - | ==Concept==
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| - | *Protein structures (3D) were parsed into a finite number of structural alphabets
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| - | *Using these '''structural alphabets''', identify meaning structural words..
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| - | **Frequent structural words (motifs?) and popular sentences (super secondary structures?)
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| - | *Using ''words'' to relate molecules (proteins) and organismic phylogeny (genomes; book)
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| - | ==Procedure==
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| - | ===Standard data set===
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| - | *We are going to use [http://scop.berkeley.edu the SCOP DB]: sequences and structures in the [http://astral.berkeley.edu/ Astral] compendium
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| - | ===Torsion angles===
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| - | ====Calculation====
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| - | *Following tools can be used to calculate torsion angles of backbones
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| - | **[http://dirac.cnrs-orleans.fr/MMTK/ MMTK] (python molecular modeling toolkit)
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| - | **[http://swift.cmbi.ru.nl/gv/dssp/ DSSP] (by C. Sander)
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| - | ==Status(result)==
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Latest revision as of 03:21, 9 July 2010
