Structural phylogeny
From CSBLwiki
Contents |
Concept
- Protein structures (3D) were parsed into a finite number of structural alphabets
- Using these structural alphabets, identify meaning structural words..
- Frequent structural words (motifs?) and popular sentences (super secondary structures?)
- Using words to relate molecules (proteins) and organismic phylogeny (genomes; book)
Procedure
Standard data set
Torsion angles
Calculation
- MMTB (python toolbox)
- DSSP (by C. Sander)