Computational & Synthetic Biology Laboratory at Korea University

Research Topics Publications Members Softwares

Publications

[1] Igor V Grigoriev and In-Geol Choi. “Target selection for structural genomics: a single genome approach”. In: OMICS : A JOURNAL OF INTEGRATIVE BIOLOGY 6.4 (2002), pp. 349-62. DOI: 10.1089/153623102321112773. PMID: 12626094.

[2] In-Geol Choi, Dong Hae Shin, Jeroen Brandsen, Jaru Jancarik, Didier Busso, Hisao Yokota, Rosalind Kim, and Sung-Hou Kim. “Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 4.1 (2003), pp. 31-4. PMID: 12943365.

[3] Sung-Hou Kim, Dong Hae Shin, In-Geol Choi, Ursula Schulze-Gahmen, Shengfeng Chen, and Rosalind Kim. “Structure-based functional inference in structural genomics”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 4.2-3 (2003), pp. 129-35. PMID: 14649297.

[4] In-Geol Choi, Jaimyoung Kwon, and Sung-Hou Kim. “Local feature frequency profile: a method to measure structural similarity in proteins”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101.11 (2004), pp. 3797-802. DOI: 10.1073/pnas.0308656100. PMID: 14985506.

[5] Dong Hae Shin, In-Geol Choi, Didier Busso, Jaru Jancarik, Hisao Yokota, Rosalind Kim, and Sung-Hou Kim. “Structure of OsmC from Escherichia coli: a salt-shock-induced protein”. In: ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 60.Pt 5 (2004), pp. 903-11. DOI: 10.1107/S0907444904005013. PMID: 15103136.

[6] Sung-Hou Kim, Dong Hae Shin, Jinyu Liu, Vaheh Oganesyan, Shengfeng Chen, Qian Steven Xu, Jeong-Sun Kim, Debanu Das, Ursula Schulze-Gahmen, Stephen R Holbrook, et al. “Structural genomics of minimal organisms and protein fold space”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 6.2-3 (2005), pp. 63-70. DOI: 10.1007/s10969-005-2651-9. PMID: 16211501.

[7] Gregory E Sims, In-Geol Choi, and Sung-Hou Kim. “Protein conformational space in higher order phi-Psi maps”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102.3 (2005), pp. 618-21. DOI: 10.1073/pnas.0408746102. PMID: 15640351.

[8] In-Geol Choi and Sung-Hou Kim. “Evolution of protein structural classes and protein sequence families”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103.38 (2006), pp. 14056-61. DOI: 10.1073/pnas.0606239103. PMID: 16959887.

[9] In-Geol Choi and Sung-Hou Kim. “Global extent of horizontal gene transfer”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 104.11 (2007), pp. 4489-94. DOI: 10.1073/pnas.0611557104. PMID: 17360551.

[10] In-Geol Choi and Yeon Gyu Yu. “Interaction and assembly of HBV structural proteins: novel target sites of anti-HBV agents”. In: INFECTIOUS DISORDERS DRUG TARGETS 7.3 (2007), pp. 251-6. PMID: 17897061.

[11] Dong Hae Shin, Jingtong Hou, John-Marc Chandonia, Debanu Das, In-Geol Choi, Rosalind Kim, and Sung-Hou Kim. “Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 8.2-3 (2007), pp. 99-105. DOI: 10.1007/s10969-007-9025-4. PMID: 17764033.

[12] Ki-Chul Hwang, Ji Young Kim, Woochul Chang, Dae-Sung Kim, Soyeon Lim, Sang-Moon Kang, Byeong-Wook Song, Hye-Yeong Ha, Yong Joon Huh, In-Geol Choi, et al. “Chemicals that modulate stem cell differentiation”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105.21 (2008), pp. 7467-71. DOI: 10.1073/pnas.0802825105. PMID: 18480249.

[13] Hyun-Soo Kim, Woo-Chul Chang, Ki-Chul Hwang, In-Geol Choi, and Wyun-Kon Park. “Effect of propofol on calcium homeostasis in hypoxia-reoxygenated neonatal rat cardiomyocytes”. In: EUROPEAN JOURNAL OF PHARMACOLOGY 594.1-3 (2008), pp. 139-45. DOI: 10.1016/j.ejphar.2008.07.027. PMID: 18674530.

[14] Soo Rin Kim, Hee Jung Park, Do Seong Yim, Hee Tack Kim, In-Geol Choi, and Kyoung Heon Kim. “Analysis of survival rates and cellular fatty acid profiles of Listeria monocytogenes treated with supercritical carbon dioxide under the influence of cosolvents”. In: JOURNAL OF MICROBIOLOGICAL METHODS 75.1 (2008), pp. 47-54. DOI: 10.1016/j.mimet.2008.04.012. PMID: 18565606.

[15] Jin Seop Bak, Ja Kyong Ko, In-Geol Choi, Yong-Cheol Park, Jin-Ho Seo, and Kyoung Heon Kim. “Fungal pretreatment of lignocellulose by Phanerochaete chrysosporium to produce ethanol from rice straw”. In: BIOTECHNOLOGY AND BIOENGINEERING 104.3 (2009), pp. 471-82. DOI: 10.1002/bit.22423. PMID: 19591194.

[16] Jin Seop Bak, Ja Kyong Ko, Young Hwan Han, Byung Cheol Lee, In-Geol Choi, and Kyoung Heon Kim. “Improved enzymatic hydrolysis yield of rice straw using electron beam irradiation pretreatment”. In: BIORESOURCE TECHNOLOGY 100.3 (2009), pp. 1285-90. DOI: 10.1016/j.biortech.2008.09.010. PMID: 18930388.

[17] Eun Sil Kim, Hee Jin Lee, Won-Gi Bang, In-Geol Choi, and Kyoung Heon Kim. “Functional characterization of a bacterial expansin from Bacillus subtilis for enhanced enzymatic hydrolysis of cellulose”. In: BIOTECHNOLOGY AND BIOENGINEERING 102.5 (2009), pp. 1342-53. DOI: 10.1002/bit.22193. PMID: 19058186.

[18] Ja Kyong Ko, Jin Seop Bak, Min Woo Jung, Hee Jin Lee, In-Geol Choi, Tae Hyun Kim, and Kyoung Heon Kim. “Ethanol production from rice straw using optimized aqueous-ammonia soaking pretreatment and simultaneous saccharification and fermentation processes”. In: BIORESOURCE TECHNOLOGY 100.19 (2009), pp. 4374-80. DOI: 10.1016/j.biortech.2009.04.026. PMID: 19427784.

[19] Ja Kyong Ko, Min Woo Jung, Kyoung Heon Kim, and In-Geol Choi. “Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3)”. In: NEW BIOTECHNOLOGY 26.3-4 (2009), pp. 157-64. DOI: 10.1016/j.nbt.2009.07.009. PMID: 19646553.

[20] Saeyoung Lee, Jonas Yun Lee, Sung Chul Ha, Jina Jung, Dong Hae Shin, Kyoung Heon Kim, and In Geol Choi. “Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40”. In: ACTA CRYSTALLOGRAPHICA. SECTION F, STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 65.Pt 12 (2009), pp. 1299-301. DOI: 10.1107/S174430910904603X. PMID: 20054134.

[21] Jin Seop Bak, Myoung Dong Kim, In-Geol Choi, and Kyoung Heon Kim. “Biological pretreatment of rice straw by fermenting with Dichomitus squalens”. In: NEW BIOTECHNOLOGY 27.4 (2010), pp. 424-34. DOI: 10.1016/j.nbt.2010.02.021. PMID: 20206309.

[22] Hee Taek Kim, Saeyoung Lee, Dongho Lee, Hyun-Soo Kim, Won-Gi Bang, Kyoung Heon Kim, and In-Geol Choi. “Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 86.1 (2010), pp. 227-34. DOI: 10.1007/s00253-009-2256-5. PMID: 19802606.

[23] Hyeok-Jin Ko, Eun Woo Lee, Won-Gi Bang, Cheol-Koo Lee, Kyoung Heon Kim, and In-Geol Choi. “Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family”. In: MOLECULES AND CELLS 29.5 (2010), pp. 485-92. DOI: 10.1007/s10059-010-0060-9. PMID: 20396964.

[24] Hee Jin Lee, Saeyoung Lee, Hyeok-Jin Ko, Kyoung Heon Kim, and In-Geol Choi. “An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity”. In: MOLECULES AND CELLS 29.4 (2010), pp. 379-85. DOI: 10.1007/s10059-010-0033-z. PMID: 20213317.

[25] Min Hye Shin, Do Yup Lee, Kirsten Skogerson, Gert Wohlgemuth, In-Geol Choi, Oliver Fiehn, and Kyoung Heon Kim. “Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans”. In: BIOTECHNOLOGY AND BIOENGINEERING 105.3 (2010), pp. 477-88. DOI: 10.1002/bit.22557. PMID: 19806675.

[26] Min Hye Shin, Do Yup Lee, Gert Wohlgemuth, In-Geol Choi, Oliver Fiehn, and Kyoung Heon Kim. “Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40”. In: NEW BIOTECHNOLOGY 27.2 (2010), pp. 156-68. DOI: 10.1016/j.nbt.2010.02.023. PMID: 20215059.

[27] Heesang Song, Byeong-Wook Song, Min-Ji Cha, In-Geol Choi, and Ki-Chul Hwang. “Modification of mesenchymal stem cells for cardiac regeneration”. In: EXPERT OPINION ON BIOLOGICAL THERAPY 10.3 (2010), pp. 309-19. DOI: 10.1517/14712590903455997. PMID: 20132054.

[28] Sung Chul Ha, Saeyoung Lee, Jonas Lee, Hee Taek Kim, Hyeok-Jin Ko, Kyoung Heon Kim, and In-Geol Choi. “Crystal structure of a key enzyme in the agarolytic pathway, α-neoagarobiose hydrolase from Saccharophagus degradans 2-40”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 412.2 (2011), pp. 238-44. DOI: 10.1016/j.bbrc.2011.07.073. PMID: 21810409.

[29] Young Hoon Jung, In Jung Kim, Jong-In Han, In-Geol Choi, and Kyoung Heon Kim. “Aqueous ammonia pretreatment of oil palm empty fruit bunches for ethanol production”. In: BIORESOURCE TECHNOLOGY 102.20 (2011), pp. 9806-9. DOI: 10.1016/j.biortech.2011.07.050. PMID: 21852123.

[30] Young Hoon Jung, In Jung Kim, Jae Jin Kim, Kyeong Keun Oh, Jong-In Han, In-Geol Choi, and Kyoung Heon Kim. “Ethanol production from oil palm trunks treated with aqueous ammonia and cellulase”. In: BIORESOURCE TECHNOLOGY 102.15 (2011), pp. 7307-12. DOI: 10.1016/j.biortech.2011.04.082. PMID: 21616661.

[31] Sejong Oh, Hanseong Roh, Hyeok-Jin Ko, Sujin Kim, Kyoung Heon Kim, Sung Eun Lee, In Seop Chang, Saehun Kim, and In-Geol Choi. “Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine”. In: JOURNAL OF BACTERIOLOGY 193.11 (2011), pp. 2882-3. DOI: 10.1128/JB.00343-11. PMID: 21478365.

[32] Hanseong Roh, Hyeok-Jin Ko, Daehee Kim, Dong Geon Choi, Shinyoung Park, Sujin Kim, In Seop Chang, and In-Geol Choi. “Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612”. In: JOURNAL OF BACTERIOLOGY 193.1 (2011), pp. 307-8. DOI: 10.1128/JB.01217-10. PMID: 21036996.

[33] Hanseong Roh, Gabriel C Uguru, Hyeok-Jin Ko, Sujin Kim, Byung-Yong Kim, Michael Goodfellow, Alan T Bull, Kyoung Heon Kim, Mervyn J Bibb, In-Geol Choi, et al. “Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032”. In: JOURNAL OF BACTERIOLOGY 193.13 (2011), pp. 3391-2. DOI: 10.1128/JB.05041-11. PMID: 21551311.

[34] Kwang-Il Goh and In-Geol Choi. “Exploring the human diseasome: the human disease network”. In: BRIEFINGS IN FUNCTIONAL GENOMICS 11.6 (2012), pp. 533-42. DOI: 10.1093/bfgp/els032. PMID: 23063808.

[35] Young Hoon Jung, Sooah Kim, Taek Ho Yang, Hee Jong Lee, Doyoung Seung, Yong-Cheol Park, Jin-Ho Seo, In-Geol Choi, and Kyoung Heon Kim. “Aqueous ammonia pretreatment, saccharification, and fermentation evaluation of oil palm fronds for ethanol production”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 35.9 (2012), pp. 1497-503. DOI: 10.1007/s00449-012-0739-8. PMID: 22644062.

[36] Hee Taek Kim, Jae Hyuk Chung, Damao Wang, Jieun Lee, Hee Chul Woo, In-Geol Choi, and Kyoung Heon Kim. “Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 93.5 (2012), pp. 2233-9. DOI: 10.1007/s00253-012-3882-x. PMID: 22281843.

[37] Hee Taek Kim, Hyeok-Jin Ko, Nahyun Kim, Duwoon Kim, Dongho Lee, In-Geol Choi, Hee Chul Woo, Myoung Dong Kim, and Kyoung Heon Kim. “Characterization of a recombinant endo-type alginate lyase (Alg7D) from Saccharophagus degradans”. In: BIOTECHNOLOGY LETTERS 34.6 (2012), pp. 1087-92. DOI: 10.1007/s10529-012-0876-9. PMID: 22391735.

[38] Hee Taek Kim, Saeyoung Lee, Kyoung Heon Kim, and In-Geol Choi. “The complete enzymatic saccharification of agarose and its application to simultaneous saccharification and fermentation of agarose for ethanol production”. In: BIORESOURCE TECHNOLOGY 107 (2012), pp. 301-6. DOI: 10.1016/j.biortech.2011.11.120. PMID: 22209444.

[39] Su Jin Kim, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, In-Geol Choi, and Hyun Park. “Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil”. In: JOURNAL OF BACTERIOLOGY 194.9 (2012), p. 2403. DOI: 10.1128/JB.00234-12. PMID: 22493207.

[40] Su Jin Kim, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, Hyoungseok Lee, Jungeun Lee, In-Geol Choi, and Hyun Park. “Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite”. In: JOURNAL OF BACTERIOLOGY 194.8 (2012), p. 2096. DOI: 10.1128/JB.00096-12. PMID: 22461541.

[41] Hyeok-Jin Ko, Won-Gi Bang, Kyoung Heon Kim, and In-Geol Choi. “Production of p-acetaminophenol by whole-cell catalysis using Escherichia coli overexpressing bacterial aryl acylamidase”. In: BIOTECHNOLOGY LETTERS 34.4 (2012), pp. 677-82. DOI: 10.1007/s10529-011-0811-5. PMID: 22130742.

[42] Hyeok-Jin Ko, Eunhye Park, Joseph Song, Taek Ho Yang, Hee Jong Lee, Kyoung Heon Kim, and In-Geol Choi. “Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 78.9 (2012), pp. 3051-8. DOI: 10.1128/AEM.07004-11. PMID: 22344647.

[43] Hanseong Roh, Eun Ju Yun, Saeyoung Lee, Hyeok-Jin Ko, Sujin Kim, Byung-Yong Kim, Heesang Song, Kwang-il Lim, Kyoung Heon Kim, and In-Geol Choi. “Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source”. In: JOURNAL OF BACTERIOLOGY 194.10 (2012), pp. 2773-4. DOI: 10.1128/JB.00303-12. PMID: 22535948.

[44] Hee Taek Kim, Eun Ju Yun, Damao Wang, Jae Hyuk Chung, In-Geol Choi, and Kyoung Heon Kim. “High temperature and low acid pretreatment and agarase treatment of agarose for the production of sugar and ethanol from red seaweed biomass”. In: BIORESOURCE TECHNOLOGY 136 (2013), pp. 582-7. DOI: 10.1016/j.biortech.2013.03.038. PMID: 23567734.

[45] In Jung Kim, Hyeok-Jin Ko, Tae-Wan Kim, In-Geol Choi, and Kyoung Heon Kim. “Characteristics of the binding of a bacterial expansin (BsEXLX1) to microcrystalline cellulose”. In: BIOTECHNOLOGY AND BIOENGINEERING 110.2 (2013), pp. 401-7. DOI: 10.1002/bit.24719. PMID: 22949138.

[46] In Jung Kim, Hyeok-Jin Ko, Tae-Wan Kim, Ki Hyun Nam, In-Geol Choi, and Kyoung Heon Kim. “Binding characteristics of a bacterial expansin (BsEXLX1) for various types of pretreated lignocellulose”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 97.12 (2013), pp. 5381-8. DOI: 10.1007/s00253-012-4412-6. PMID: 23053073.

[47] Hee Jin Lee, In Jung Kim, Jihyun F Kim, In-Geol Choi, and Kyoung Heon Kim. “An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis”. In: BIORESOURCE TECHNOLOGY 149 (2013), pp. 516-9. DOI: 10.1016/j.biortech.2013.09.086. PMID: 24140897.

[48] Eun Ju Yun, Saeyoung Lee, Ji Hye Kim, Bo Bae Kim, Hee Taek Kim, Sun Hee Lee, Jeffrey G Pelton, Nam Joo Kang, In-Geol Choi, and Kyoung Heon Kim. “Enzymatic production of 3,6-anhydro-L-galactose from agarose and its purification and in vitro skin whitening and anti-inflammatory activities”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 97.7 (2013), pp. 2961-70. DOI: 10.1007/s00253-012-4184-z. PMID: 22678025.

[49] Donggeon Choi, Sae Bom Lee, Sohyun Kim, Byoungnam Min, In-Geol Choi, and In Seop Chang. “Metabolically engineered glucose-utilizing Shewanella strains under anaerobic conditions”. In: BIORESOURCE TECHNOLOGY 154 (2014), pp. 59-66. DOI: 10.1016/j.biortech.2013.12.025. PMID: 24384311.

[50] Hyerim Hong, Hyeok-Jin Ko, In-Geol Choi, and Woojun Park. “Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1”. In: MICROBIAL ECOLOGY 67.2 (2014), pp. 369-79. DOI: 10.1007/s00248-013-0343-8. PMID: 24337108.

[51] Young Hoon Jung, Hyun Kyung Kim, Du-Sup Song, In-Geol Choi, Taek Ho Yang, Hee Jong Lee, Doyoung Seung, and Kyoung Heon Kim. “Feasibility test of utilizing Saccharophagus degradans 2-40(T) as the source of crude enzyme for the saccharification of lignocellulose”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 37.4 (2014), pp. 707-10. DOI: 10.1007/s00449-013-1040-1. PMID: 23990129.

[52] In Jung Kim, Hee Jin Lee, In-Geol Choi, and Kyoung Heon Kim. “Synergistic proteins for the enhanced enzymatic hydrolysis of cellulose by cellulase”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 98.20 (2014), pp. 8469-80. DOI: 10.1007/s00253-014-6001-3. PMID: 25129610.

[53] Chan Hyoung Lee, Hee Taek Kim, Eun Ju Yun, Ah Reum Lee, Sa Rang Kim, Jae-Han Kim, In-Geol Choi, and Kyoung Heon Kim. “A novel agarolytic β-galactosidase acts on agarooligosaccharides for complete hydrolysis of agarose into monomers”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 80.19 (2014), pp. 5965-73. DOI: 10.1128/AEM.01577-14. PMID: 25038102.

[54] Robin A Ohm, Robert Riley, Asaf Salamov, Byoungnam Min, In-Geol Choi, and Igor V Grigoriev. “Genomics of wood-degrading fungi”. In: FUNGAL GENETICS AND BIOLOGY : FG & B 72 (2014), pp. 82-90. DOI: 10.1016/j.fgb.2014.05.001. PMID: 24853079.

[55] Jieun An, Hyeji Kwon, Eunjung Kim, Young Mi Lee, Hyeok Jin Ko, Hongjae Park, In-Geol Choi, Sooah Kim, Kyoung Heon Kim, Wankee Kim, et al. “Tolerance to acetic acid is improved by mutations of the TATA-binding protein gene”. In: ENVIRONMENTAL MICROBIOLOGY 17.3 (2015), pp. 656-69. DOI: 10.1111/1462-2920.12489. PMID: 24761971.

[56] Jiyeong Jeong, Johannes Bertsch, Verena Hess, Sunju Choi, In-Geol Choi, In Seop Chang, and Volker Müller. “Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 81.14 (2015), pp. 4782-90. DOI: 10.1128/AEM.00675-15. PMID: 25956767.

[57] In Jung Kim, Ki Hyun Nam, Eun Ju Yun, Sooah Kim, Hak Jin Youn, Hee Jin Lee, In-Geol Choi, and Kyoung Heon Kim. “Optimization of synergism of a recombinant auxiliary activity 9 from Chaetomium globosum with cellulase in cellulose hydrolysis”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 99.20 (2015), pp. 8537-47. DOI: 10.1007/s00253-015-6592-3. PMID: 25936375.

[58] Sun-Ki Kim, Yong-Su Jin, In-Geol Choi, Yong-Cheol Park, and Jin-Ho Seo. “Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents”. In: METABOLIC ENGINEERING 29 (2015), pp. 46-55. DOI: 10.1016/j.ymben.2015.02.004. PMID: 25724339.

[59] Saeyoung Lee, Eun-Hye Park, Hyeok-Jin Ko, Won Gi Bang, Hye-Yeon Kim, Kyoung Heon Kim, and In-Geol Choi. “Crystal structure analysis of a bacterial aryl acylamidase belonging to the amidase signature enzyme family”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 467.2 (2015), pp. 268-74. DOI: 10.1016/j.bbrc.2015.09.177. PMID: 26454172.

[60] Yeji Lee, Olviyani Nasution, Eunyong Choi, In-Geol Choi, Wankee Kim, and Wonja Choi. “Transcriptome analysis of acetic-acid-treated yeast cells identifies a large set of genes whose overexpression or deletion enhances acetic acid tolerance”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 99.15 (2015), pp. 6391-403. DOI: 10.1007/s00253-015-6706-y. PMID: 26062532.

[61] Byoungnam Min, Hongjae Park, Yeongseon Jang, Jae-Jin Kim, Kyoung Heon Kim, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Igor V Grigoriev, Joseph W Spatafora, et al. “Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation”. In: JOURNAL OF BIOTECHNOLOGY 211 (2015), pp. 42-3. DOI: 10.1016/j.jbiotec.2015.06.426. PMID: 26188242.

[62] Olviyani Nasution, Jaok Lee, Kavitha Srinivasa, In-Geol Choi, Young Mi Lee, Eunjung Kim, Wonja Choi, and Wankee Kim. “Loss of Dfg5 glycosylphosphatidylinositol-anchored membrane protein confers enhanced heat tolerance in Saccharomyces cerevisiae”. In: ENVIRONMENTAL MICROBIOLOGY 17.8 (2015), pp. 2721-34. DOI: 10.1111/1462-2920.12649. PMID: 25297926.

[63] Eun Ju Yun, In-Geol Choi, and Kyoung Heon Kim. “Red macroalgae as a sustainable resource for bio-based products”. In: TRENDS IN BIOTECHNOLOGY 33.5 (2015), pp. 247-9. DOI: 10.1016/j.tibtech.2015.02.006. PMID: 25818231.

[64] Eun Ju Yun, Saeyoung Lee, Hee Taek Kim, Jeffrey G Pelton, Sooah Kim, Hyeok-Jin Ko, In-Geol Choi, and Kyoung Heon Kim. “The novel catabolic pathway of 3,6-anhydro-L-galactose, the main component of red macroalgae, in a marine bacterium”. In: ENVIRONMENTAL MICROBIOLOGY 17.5 (2015), pp. 1677-88. DOI: 10.1111/1462-2920.12607. PMID: 25156229.

[65] Sun Young Choi, Byeonghyeok Park, In-Geol Choi, Sang Jun Sim, Sun-Mi Lee, Youngsoon Um, and Han Min Woo. “Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq”. In: SCIENTIFIC REPORTS 6 (2016), p. 30584. DOI: 10.1038/srep30584. PMID: 27488818.

[66] Jin-Ju Jeong, Byeong Hyeok Park, Hongjae Park, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus)”. In: GENOME ANNOUNCEMENTS 4.3 (2016). DOI: 10.1128/genomeA.00577-16. PMID: 27313310.

[67] Jin-Ju Jeong, Byeonghyeok Park, Ji Yeon Oh, Mohamed Mannaa, Yoo Jun Kim, Jeum Kyu Hong, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede”. In: GENOME ANNOUNCEMENTS 4.5 (2016). DOI: 10.1128/genomeA.01168-16. PMID: 27795281.

[68] Jin-Ju Jeong, Hongjae Park, Byeong Hyeok Park, Mohamed Mannaa, Mee Kyung Sang, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum)”. In: GENOME ANNOUNCEMENTS 4.2 (2016). DOI: 10.1128/genomeA.00301-16. PMID: 27103726.

[69] Hyun Jung Kim, Hyo Jung Eom, Chulwoo Park, Jaejoon Jung, Bora Shin, Wook Kim, Namhyun Chung, In-Geol Choi, and Woojun Park. “Calcium Carbonate Precipitation by Bacillus and Sporosarcina Strains Isolated from Concrete and Analysis of the Bacterial Community of Concrete”. In: JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 26.3 (2016), pp. 540-8. DOI: 10.4014/jmb.1511.11008. PMID: 26699752.

[70] Ja Kyong Ko, Hyeokjin Ko, Kyoung Heon Kim, and In-Geol Choi. “Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 39.4 (2016), pp. 677-84. DOI: 10.1007/s00449-016-1548-2. PMID: 26809714.

[71] Hongjae Park, Byeonghyeok Park, Hyun Jung Kim, Woojun Park, and In-Geol Choi. “Draft Genome Sequences of Two Ureolytic Bacteria Isolated from Concrete Block Waste”. In: GENOME ANNOUNCEMENTS 4.4 (2016). DOI: 10.1128/genomeA.00762-16. PMID: 27491992.

[72] Eun Ju Yun, Hee Taek Kim, Kyung Mun Cho, Sora Yu, Sooah Kim, In-Geol Choi, and Kyoung Heon Kim. “Pretreatment and saccharification of red macroalgae to produce fermentable sugars”. In: BIORESOURCE TECHNOLOGY 199 (2016), pp. 311-318. DOI: 10.1016/j.biortech.2015.08.001. PMID: 26276401.

[73] Jin-Ju Jeong, Dong Wan Lee, Byeonghyeok Park, Mee Kyung Sang, In-Geol Choi, and Ki Deok Kim. “Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 67.3 (2017), pp. 610-616. DOI: 10.1099/ijsem.0.001670. PMID: 27902284.

[74] Jung Hyun Kim, Eun Ju Yun, Nari Seo, Sora Yu, Dong Hyun Kim, Kyung Mun Cho, Hyun Joo An, Jae-Han Kim, In-Geol Choi, and Kyoung Heon Kim. “Enzymatic liquefaction of agarose above the sol-gel transition temperature using a thermostable endo-type β-agarase, Aga16B”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 101.3 (2017), pp. 1111-1120. DOI: 10.1007/s00253-016-7831-y. PMID: 27664160.

[75] Hyeok-Jin Ko, Hyun Joo Park, Sun Hee Lee, Haeyoung Jeong, Jung-Hoon Bae, Bong Hyun Sung, In-Geol Choi, and Jung-Hoon Sohn. “Draft Genome Sequence of an Acid-Tolerant Yeast, Candida zemplinina NP2, a Potential Producer of Organic Acids”. In: GENOME ANNOUNCEMENTS 5.39 (2017). DOI: 10.1128/genomeA.01052-17. PMID: 28963218.

[76] Hee Jin Lee, In Jung Kim, Hak Jin Youn, Eun Ju Yun, In-Geol Choi, and Kyoung Heon Kim. “Cellotriose-hydrolyzing activity conferred by truncating the carbohydrate-binding modules of Cel5 from Hahella chejuensis”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 40.2 (2017), pp. 241-249. DOI: 10.1007/s00449-016-1692-8. PMID: 27761654.

[77] Saeyoung Lee, Kyoung Heon Kim, Hye-Yeon Kim, and In-Geol Choi. “Crystal structure analysis of 3,6-anhydro-l-galactonate cycloisomerase suggests emergence of novel substrate specificity in the enolase superfamily”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 491.1 (2017), pp. 217-222. DOI: 10.1016/j.bbrc.2017.07.080. PMID: 28716734.

[78] Saeyoung Lee, Eun Ju Yun, Kyoung Heon Kim, Hye Yeon Kim, and In Geol Choi. “3,6-Anhydro-L-galactonate cycloisomerase from Vibrio sp. strain EJY3: crystallization and X-ray crystallographic analysis”. In: ACTA CRYSTALLOGRAPHICA. SECTION F, STRUCTURAL BIOLOGY COMMUNICATIONS 73.Pt 9 (2017), pp. 511-514. DOI: 10.1107/S2053230X17011797. PMID: 28876229.

[79] Byoungnam Min, Igor V Grigoriev, and In-Geol Choi. “FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation”. In: BIOINFORMATICS (OXFORD, ENGLAND) 33.18 (2017), pp. 2936-2937. DOI: 10.1093/bioinformatics/btx353. PMID: 28582481.

[80] Byoungnam Min, Ji-Hyun Park, Hongjae Park, Hyeon-Dong Shin, and In-Geol Choi. “Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization”. In: SCIENTIFIC REPORTS 7 (2017), p. 40432. DOI: 10.1038/srep40432. PMID: 28091548.

[81] Byeonghyeok Park, Min-Jeong Baek, Byoungnam Min, and In-Geol Choi. “Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package”. In: JOURNAL OF COMPUTATIONAL BIOLOGY : A JOURNAL OF COMPUTATIONAL MOLECULAR CELL BIOLOGY 24.9 (2017), pp. 917-922. DOI: 10.1089/cmb.2017.0066. PMID: 28632399.

[82] Shinyoung Park, Muhammad Yasin, Jiyeong Jeong, Minseok Cha, Hyunsoo Kang, Nulee Jang, In-Geol Choi, and In Seop Chang. “Acetate-assisted increase of butyrate production by Eubacterium limosum KIST612 during carbon monoxide fermentation”. In: BIORESOURCE TECHNOLOGY 245.Pt A (2017), pp. 560-566. DOI: 10.1016/j.biortech.2017.08.132. PMID: 28898856.

[83] Duleepa Pathiraja, Kyoung Heon Kim, and In-Geol Choi. “Rapid and robust enzymatic sensing and quantitation of 3,6-Anhydro-L-galactose in a heterogeneous sugar mixture”. In: CARBOHYDRATE RESEARCH 446-447 (2017), pp. 13-18. DOI: 10.1016/j.carres.2017.04.022. PMID: 28482192.

[84] Chunyan Wu, Su Hyeon Hwang, Yaoyao Jia, Joobong Choi, Yeon-Ji Kim, Dahee Choi, Duleepa Pathiraja, In-Geol Choi, Seung-Hoi Koo, and Sung-Joon Lee. “Olfactory receptor 544 reduces adiposity by steering fuel preference toward fats”. In: THE JOURNAL OF CLINICAL INVESTIGATION 127.11 (2017), pp. 4118-4123. DOI: 10.1172/JCI89344. PMID: 28990936.

[85] Miseon Bang, Cheng-Chung Yong, Hyeok-Jin Ko, In-Geol Choi, and Sejong Oh. “Transcriptional Response and Enhanced Intestinal Adhesion Ability of Lactobacillus rhamnosus GG after Acid Stress”. In: JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 28.10 (2018), pp. 1604-1613. DOI: 10.4014/jmb.1807.07033. PMID: 30196592.

[86] Søs I Dichmann, Byeonghyeok Park, Duleepa Pathiraja, In-Geol Choi, Peter Stougaard, and Rosanna C Hennessy. “Draft Genome Sequence of a Novel Serratia sp. Strain with Antifungal Activity”. In: MICROBIOLOGY RESOURCE ANNOUNCEMENTS 7.22 (2018). DOI: 10.1128/MRA.01340-18. PMID: 30533854.

[87] Alexey A Grum-Grzhimaylo, Daniel L Falkoski, Joost van den Heuvel, Claudio A Valero-Jiménez, Byoungnam Min, In-Geol Choi, Anna Lipzen, Chris G Daum, Duur K Aanen, Adrian Tsang, et al. “The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet”. In: MOLECULAR ECOLOGY 27.23 (2018), pp. 4808-4819. DOI: 10.1111/mec.14912. PMID: 30368956.

[88] Jin-Ju Jeong, Ye Ji Lee, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequences of Chryseobacterium lactis NCTC11390T Isolated from Milk, Chryseobacterium oncorhynchi 701B-08T from Rainbow Trout, and Chryseobacterium viscerum 687B-08T from Diseased Fish”. In: GENOME ANNOUNCEMENTS 6.26 (2018). DOI: 10.1128/genomeA.00628-18. PMID: 29954917.

[89] Jin-Ju Jeong, Hyeon-Ji Moon, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequences of Bacillus megaterium KU143, Microbacterium testaceum KU313, and Pseudomonas protegens AS15, Isolated from Stored Rice Grains”. In: GENOME ANNOUNCEMENTS 6.22 (2018). DOI: 10.1128/genomeA.00468-18. PMID: 29853508.

[90] Jin-Ju Jeong, Mee Kyung Sang, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, and Ki Deok Kim. “Draft Genome Sequence of Phosphate-Solubilizing Chryseobacterium sp. Strain ISE14, a Biocontrol and Plant Growth-Promoting Rhizobacterium Isolated from Cucumber”. In: GENOME ANNOUNCEMENTS 6.26 (2018). DOI: 10.1128/genomeA.00612-18. PMID: 29954909.

[91] Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, and Jae-Jin Kim. “Maribacter litoralis sp. nov. a marine bacterium isolated from seashore”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68.11 (2018), pp. 3471-3478. DOI: 10.1099/ijsem.0.003011. PMID: 30222095.

[92] Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, and Jae-Jin Kim. “Oceanimonas marisflavi sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68.9 (2018), pp. 2990-2995. DOI: 10.1099/ijsem.0.002932. PMID: 30040062.

[93] Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, and Jae-Jin Kim. “Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68.7 (2018), pp. 2279-2284. DOI: 10.1099/ijsem.0.002825. PMID: 29781802.

[94] Yoo Seok Lee, Seungwoo Baek, Hyeryeong Lee, Stacy Simai Reginald, Yeongeun Kim, Hyunsoo Kang, In-Geol Choi, and In Seop Chang. “Construction of Uniform Monolayer- and Orientation-Tunable Enzyme Electrode by a Synthetic Glucose Dehydrogenase without Electron-Transfer Subunit via Optimized Site-Specific Gold-Binding Peptide Capable of Direct Electron Transfer”. In: ACS APPLIED MATERIALS & INTERFACES 10.34 (2018), pp. 28615-28626. DOI: 10.1021/acsami.8b08876. PMID: 30067023.

[95] Byoungnam Min, Seunghwan Kim, Youn-Lee Oh, Won-Sik Kong, Hongjae Park, Heejung Cho, Kab-Yeul Jang, Jeong-Gu Kim, and In-Geol Choi. “Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus”. In: BMC GENOMICS 19.1 (2018), p. 789. DOI: 10.1186/s12864-018-5159-y. PMID: 30382831.

[96] Duleepa Pathiraja, Saeyoung Lee, and In-Geol Choi. “Model-Based Complete Enzymatic Production of 3,6-Anhydro-l-galactose from Red Algal Biomass”. In: JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 66.26 (2018), pp. 6814-6821. DOI: 10.1021/acs.jafc.8b01792. PMID: 29896965.

[97] Mi Na Rhie, Byeonghyeok Park, Hyeok-Jin Ko, In-Geol Choi, and Ok Bin Kim. “Transcriptome analysis and anaerobic C4 -dicarboxylate transport in Actinobacillus succinogenes”. In: MICROBIOLOGYOPEN 7.3 (2018), p. e00565. DOI: 10.1002/mbo3.565. PMID: 29230966.

[98] Tae Jin Cho, Dongmin Yang, Byeonghyeok Park, In-Geol Choi, and Min Suk Rhee. “Whole-Genome Sequences of Five Geobacillus stearothermophilus Strains Isolated from Processing Lines of Powdered Infant Formula”. In: MICROBIOLOGY RESOURCE ANNOUNCEMENTS 8.4 (2019). DOI: 10.1128/MRA.01452-18. PMID: 30701238.

[99] Rosanna C Hennessy, Byeonghyeok Park, Duleepa Pathiraja, In-Geol Choi, Mikkel Schultz-Johansen, and Peter Stougaard. “Draft Genome Sequences of Two Glycoalkaloid-Degrading Arthrobacter Strains Isolated from Green Potato Peel”. In: MICROBIOLOGY RESOURCE ANNOUNCEMENTS 8.16 (2019). DOI: 10.1128/MRA.00226-19. PMID: 31000551.

[100] Jin-Ju Jeong, Mee Kyung Sang, Dong Wan Lee, In-Geol Choi, and Ki Deok Kim. “Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 69.3 (2019), pp. 610-615. DOI: 10.1099/ijsem.0.003091. PMID: 30372407.

[101] Hyunsoo Kang, Byeonghyeok Park, Nicole R Bolo, Duleepa Pathiraja, Shinyoung Park, Minseok Cha, In-Geol Choi, and In Seop Chang. “Gene-centric metagenome analysis reveals gene clusters for carbon monoxide conversion and validates isolation of a clostridial acetogen for C2 chemical production”. In: BIOTECHNOLOGY JOURNAL (2019), p. e1800471. DOI: 10.1002/biot.201800471. PMID: 30802355.

[102] Hyeryeong Lee, Yoo Seok Lee, Soo Kyung Lee, Seungwoo Baek, In-Geol Choi, Jae-Hyung Jang, and In Seop Chang. “Significant enhancement of direct electric communication across enzyme-electrode interface via nano-patterning of synthetic glucose dehydrogenase on spatially tunable gold nanoparticle (AuNP)-modified electrode”. In: BIOSENSORS & BIOELECTRONICS 126 (2019), pp. 170-177. DOI: 10.1016/j.bios.2018.10.013. PMID: 30399519.

[103] Byoungnam Min and In-Geol Choi. “Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP”. In: METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 1962 (2019), pp. 53-64. DOI: 10.1007/978-1-4939-9173-0_4. PMID: 31020554.

[104] Yeonjae Yoo, Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, et al. “Gemmobacter lutimaris sp. nov., a marine bacterium isolated from a tidal flat”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019). DOI: 10.1099/ijsem.0.003375. PMID: 30938664.