CABOG output

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singletons

   unassembled reads 
   $prefix.singleton.fasta

unitigs

   uniquely assemblably contigs used to build contigs and scaffolds 
   $prefix.utg.fasta 
   $prefix.utg.qv 
   $prefix.utg.qual

degenerates

   unitigs not placed in any contig or scaffold 
   $prefix.deg.fasta 
   $prefix.deg.qv 
   $prefix.deg.qual

contigs

   ungapped multiple sequence alignments 
   $prefix.ctg.fasta 
   $prefix.ctg.qv 
   $prefix.ctg.qual

scaffolds

   ordered and oriented contigs that constitute the assembly. 
   $prefix.scf.fasta 
   $prefix.scf.qv 
   $prefix.scf.qual