Mosaik aligner result1
From CSBLwiki
- Only use solexa reads
------------------------------------------------------------------------------ MosaikCoverage 0.9.0891 2009-01-31 Michael Stromberg Marth Lab, Boston College Biology Department ------------------------------------------------------------------------------ - evaluating unique reads only. - enabling graph creation. - initializing coverage array... finished. - parsing read archive... finished. - writing coverage files: * coverage statistics for scaffold00001 (760635 bp): 758521 bp (99.7 %), mean: 1126.3x * coverage statistics for scaffold00002 (494501 bp): 492721 bp (99.6 %), mean: 1141.3x * coverage statistics for scaffold00005 (1422460 bp): 1415091 bp (99.5 %), mean: 1216.1x * coverage statistics for scf04_back (648931 bp): 644574 bp (99.3 %), mean: 1248.8x * coverage statistics for scf04_front (314876 bp): 312341 bp (99.2 %), mean: 1221.0x * coverage statistics for scaffold00006 (231513 bp): 229977 bp (99.3 %), mean: 1206.0x * coverage statistics for scaffold00008 (5513 bp): 4872 bp (88.4 %), mean: 5085.0x Warning: empty y range [0:0], adjusting to [-1:1] Warning: empty y range [0:0], adjusting to [-1:1] * coverage statistics for scaffold00003 (2257 bp): 0 bp ( 0.0 %), mean: 0.0x * coverage statistics for scaffold00007 (377027 bp): 376662 bp (99.9 %), mean: 1163.3x - total coverage (4257713 bp): 4234759 bp (99.5 %), mean: 1195.8x
| # of contigs | total length | |
| before | 33 | 4248741 |
| after | 35 | 4248725 |
2 contigs are splitted
| before | after |
| scaffold00001_2 | scaffold00001_2, scaffold00001_3 |
| scaffold00001_9 | scaffold00001_10, scaffold00001_11 |
