From CSBLwiki
Popular command
- focus
- alias
Presets
- for residues within 3.6 Å of a ligand residue or metal ion ( ligand zr<3.6)
Examples
- NABH
alias active1 #0:52,207,265;
alias contact1 #0:222.B,224.B,235.B,264.B;
alias contact2 #0:358-359;
alias contact #0:222,224,235,264,359,361;
alias gal #0:gla;
alias active ligand z<3.6 & ~ligand & ~solvent;
alias active ligand z<3.6 & ~ligand & ~solvent & without CA/C1';
alias loop #:351-366;
select active & without CA/C1';
sel ligand zr<3.6 & solvent zr<3.6 & ~ligand & ~solvent
match #3:1001@O5,C1,C2,O5,C3,C4,O3 #2:375.A@O5,C5,C4,O5,C3,C2,O3
- Fig.3 in the BBRC draft
arg51
tyr335
gln361b
glu265
his264
asp207
lys222
arg235
glu224
ala356b
ser358b
tyr359b
trp89
phe87
sel #0,1:.A
color gold #0; color cyan #1
sel :51,52,335,361,265,264,207,222,235,224,358,359,89,87
sel #0:GLA.A;
focus #0:GLA.A; col magenta #0:GLA.A
colordef tgold 1 .843 0 .2;
colordef tcyan 0 1 1 .15;
color tgold,r #0;
color tcyan,r #1;
ribscale slim
colordef tblue 0 0 1 .15;
color tblue,r #2;
====
ahgA
sel #2:96,97,134,132,309,269,280,381,252,267,310
color skyblue
===
sel #1:74,127,249
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