Mosaik aligner result1
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| - | MosaikCoverage 0.9.0891 2009-01-31 | + | MosaikCoverage 0.9.0891 2009-01-31 |
| - | Michael Stromberg Marth Lab, Boston College Biology Department | + | Michael Stromberg Marth Lab, Boston College Biology Department |
| - | ------------------------------------------------------------------------------ | + | ------------------------------------------------------------------------------ |
| - | - evaluating unique reads only. | + | - evaluating unique reads only. |
| - | - enabling graph creation. | + | - enabling graph creation. |
| - | - initializing coverage array... finished. | + | - initializing coverage array... finished. |
| - | - parsing read archive... finished. | + | - parsing read archive... finished. |
| - | - writing coverage files: | + | - writing coverage files: |
| - | * coverage statistics for scaffold00001 (760635 bp): 758521 bp (99.7 %), mean: 1126.3x | + | * coverage statistics for scaffold00001 (760635 bp): 758521 bp (99.7 %), mean: 1126.3x |
| - | * coverage statistics for scaffold00002 (494501 bp): 492721 bp (99.6 %), mean: 1141.3x | + | * coverage statistics for scaffold00002 (494501 bp): 492721 bp (99.6 %), mean: 1141.3x |
| - | * coverage statistics for scaffold00005 (1422460 bp): 1415091 bp (99.5 %), mean: 1216.1x | + | * coverage statistics for scaffold00005 (1422460 bp): 1415091 bp (99.5 %), mean: 1216.1x |
| - | * coverage statistics for scf04_back (648931 bp): 644574 bp (99.3 %), mean: 1248.8x | + | * coverage statistics for scf04_back (648931 bp): 644574 bp (99.3 %), mean: 1248.8x |
| - | * coverage statistics for scf04_front (314876 bp): 312341 bp (99.2 %), mean: 1221.0x | + | * coverage statistics for scf04_front (314876 bp): 312341 bp (99.2 %), mean: 1221.0x |
| - | * coverage statistics for scaffold00006 (231513 bp): 229977 bp (99.3 %), mean: 1206.0x | + | * coverage statistics for scaffold00006 (231513 bp): 229977 bp (99.3 %), mean: 1206.0x |
| - | * coverage statistics for scaffold00008 (5513 bp): 4872 bp (88.4 %), mean: 5085.0x | + | * coverage statistics for scaffold00008 (5513 bp): 4872 bp (88.4 %), mean: 5085.0x |
| - | Warning: empty y range [0:0], adjusting to [-1:1] | + | Warning: empty y range [0:0], adjusting to [-1:1] |
| - | Warning: empty y range [0:0], adjusting to [-1:1] | + | Warning: empty y range [0:0], adjusting to [-1:1] |
| - | * coverage statistics for scaffold00003 (2257 bp): 0 bp ( 0.0 %), mean: 0.0x | + | * coverage statistics for scaffold00003 (2257 bp): 0 bp ( 0.0 %), mean: 0.0x |
| - | * coverage statistics for scaffold00007 (377027 bp): 376662 bp (99.9 %), mean: 1163.3x | + | * coverage statistics for scaffold00007 (377027 bp): 376662 bp (99.9 %), mean: 1163.3x |
| - | - total coverage (4257713 bp): 4234759 bp (99.5 %), mean: 1195.8x | + | - total coverage (4257713 bp): 4234759 bp (99.5 %), mean: 1195.8x |
Revision as of 09:04, 23 July 2010
------------------------------------------------------------------------------ MosaikCoverage 0.9.0891 2009-01-31 Michael Stromberg Marth Lab, Boston College Biology Department ------------------------------------------------------------------------------
- evaluating unique reads only. - enabling graph creation. - initializing coverage array... finished. - parsing read archive... finished.
- writing coverage files: * coverage statistics for scaffold00001 (760635 bp): 758521 bp (99.7 %), mean: 1126.3x * coverage statistics for scaffold00002 (494501 bp): 492721 bp (99.6 %), mean: 1141.3x * coverage statistics for scaffold00005 (1422460 bp): 1415091 bp (99.5 %), mean: 1216.1x * coverage statistics for scf04_back (648931 bp): 644574 bp (99.3 %), mean: 1248.8x * coverage statistics for scf04_front (314876 bp): 312341 bp (99.2 %), mean: 1221.0x * coverage statistics for scaffold00006 (231513 bp): 229977 bp (99.3 %), mean: 1206.0x * coverage statistics for scaffold00008 (5513 bp): 4872 bp (88.4 %), mean: 5085.0x Warning: empty y range [0:0], adjusting to [-1:1] Warning: empty y range [0:0], adjusting to [-1:1] * coverage statistics for scaffold00003 (2257 bp): 0 bp ( 0.0 %), mean: 0.0x * coverage statistics for scaffold00007 (377027 bp): 376662 bp (99.9 %), mean: 1163.3x
- total coverage (4257713 bp): 4234759 bp (99.5 %), mean: 1195.8x
