Genome assembly2
From CSBLwiki
(Difference between revisions)
(→Read) |
(→rRNA operon of Other species) |
||
| Line 11: | Line 11: | ||
{| class="wikitable" style="text-align:center" border="1" | {| class="wikitable" style="text-align:center" border="1" | ||
|+ | |+ | ||
| - | |Lactobacillus_acidophilus_NCFM||4||2M | + | |Lactobacillus_acidophilus_NCFM||4||2M||40 |
|- | |- | ||
|Lactobacillus_brevis_ATCC_367||5||2.2M | |Lactobacillus_brevis_ATCC_367||5||2.2M | ||
| Line 31: | Line 31: | ||
|Lactobacillus_gasseri_ATCC_33323||6||1.9M | |Lactobacillus_gasseri_ATCC_33323||6||1.9M | ||
|- | |- | ||
| - | |Lactobacillus_helveticus_DPC_4571||4||2.1M | + | |Lactobacillus_helveticus_DPC_4571||4||2.1M || 260 |
|- | |- | ||
|Lactobacillus_johnsonii_FI9785||4||1.8M | |Lactobacillus_johnsonii_FI9785||4||1.8M | ||
| Line 53: | Line 53: | ||
|Lactobacillus_salivarius_UCC118||7||1.8M | |Lactobacillus_salivarius_UCC118||7||1.8M | ||
|} | |} | ||
| + | |||
==Read== | ==Read== | ||
*Solexa Illumina reads : single-end, 36bp, 5359073 reads | *Solexa Illumina reads : single-end, 36bp, 5359073 reads | ||
*Roche 454 reads 1: paired-end, 270784(158188) reads | *Roche 454 reads 1: paired-end, 270784(158188) reads | ||
*Roche 454 reads 2: paired-end, 364291(235924) reads | *Roche 454 reads 2: paired-end, 364291(235924) reads | ||
Revision as of 14:13, 7 October 2010
Contents |
Lactobacillus genus
copy # and position of rRNA operon
- copy # : 4
- position
- 2h,3h, 5t, 7h, 9h, 11h, 13h
Terminus
- scf13 : oriC, 155nt, 56722..56876 nt
- scf10_4
rRNA operon of Other species
| Lactobacillus_acidophilus_NCFM | 4 | 2M | 40 |
| Lactobacillus_brevis_ATCC_367 | 5 | 2.2M | |
| Lactobacillus_casei | 5 | 3M | |
| Lactobacillus_casei_ATCC_334 | 5 | 2.9M | |
| Lactobacillus_casei_Zhang_uid50673 | 5 | 2.8M | |
| Lactobacillus_crispatus_ST1_uid48359 | 4 | 2M | |
| Lactobacillus_delbrueckii_bulgaricus | 9 | 1.8M | |
| Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365 | 9 | 1.8M | |
| Lactobacillus_fermentum_IFO_3956 | 5 | 2.1M | |
| Lactobacillus_gasseri_ATCC_33323 | 6 | 1.9M | |
| Lactobacillus_helveticus_DPC_4571 | 4 | 2.1M | 260 |
| Lactobacillus_johnsonii_FI9785 | 4 | 1.8M | |
| Lactobacillus_johnsonii_NCC_533 | 6 | 2M | |
| Lactobacillus_plantarum | 5 | 3.3M | |
| Lactobacillus_plantarum_JDM1 | 5 | 3.2M | |
| Lactobacillus_reuteri_DSM_20016 | 6 | 2M | |
| Lactobacillus_reuteri_F275_Kitasato | 6 | 2M | |
| Lactobacillus_rhamnosus_GG | 5 | 3M | |
| Lactobacillus_rhamnosus_Lc_705 | 5 | 3M | |
| Lactobacillus_sakei_23K | 7 | 1.9M | |
| Lactobacillus_salivarius_UCC118 | 7 | 1.8M |
Read
- Solexa Illumina reads : single-end, 36bp, 5359073 reads
- Roche 454 reads 1: paired-end, 270784(158188) reads
- Roche 454 reads 2: paired-end, 364291(235924) reads
