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		+	|Assembler || Contig Type || Number of Contigs || Total bases
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		+	|ABySS || Large Contig (>500bp) || 2517 || 3655356
	|}		|}

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Revision as of 12:37, 19 October 2010

Contents 1 Lactobacillus genus 1.1 copy # and position of rRNA operon 1.2 Terminus 1.3 rRNA operon of Other species 1.4 Read 1.5 Assembly Result

Lactobacillus genus

copy # and position of rRNA operon

• copy # : 4
• position
  • 2h,3h, 5t, 7h, 9h, 11h, 13h

Terminus

• scf13 : oriC, 155nt, 56722..56876 nt
• scf10_4

rRNA operon of Other species

Name	rRNA operon	Total Len	transposase
Lactobacillus_acidophilus_NCFM	4	2M	40
Lactobacillus_brevis_ATCC_367	5	2.2M
Lactobacillus_casei	5	3M
Lactobacillus_casei_ATCC_334	5	2.9M
Lactobacillus_casei_Zhang_uid50673	5	2.8M
Lactobacillus_crispatus_ST1_uid48359	4	2M
Lactobacillus_delbrueckii_bulgaricus	9	1.8M
Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365	9	1.8M
Lactobacillus_fermentum_IFO_3956	5	2.1M
Lactobacillus_gasseri_ATCC_33323	6	1.9M
Lactobacillus_helveticus_DPC_4571	4	2.1M	260
Lactobacillus_johnsonii_FI9785	4	1.8M
Lactobacillus_johnsonii_NCC_533	6	2M
Lactobacillus_plantarum	5	3.3M
Lactobacillus_plantarum_JDM1	5	3.2M
Lactobacillus_reuteri_DSM_20016	6	2M
Lactobacillus_reuteri_F275_Kitasato	6	2M
Lactobacillus_rhamnosus_GG	5	3M
Lactobacillus_rhamnosus_Lc_705	5	3M
Lactobacillus_sakei_23K	7	1.9M
Lactobacillus_salivarius_UCC118	7	1.8M

Read

• Solexa Illumina reads : single-end, 36bp, 5359073 reads
• Roche 454 reads 1: paired-end, 270784(158188) reads
• Roche 454 reads 2: paired-end, 364291(235924) reads

Assembly Result

Assembler	Contig Type	Number of Contigs	Total bases
ABySS	Large Contig (>500bp)	2517	3655356