Hanseong Roh

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	==Introduction==		==Introduction==
-	*[http://www.cyworld.com/singingsta/ cyworld homepage]	+	[[File:Hanseong.jpg|150px]]
-	*[http://microbio.korea.ac.kr/tc/21cboy/ Experiment blog]	+	*2005~2009 B. Tech in Biotech.: Korea Univ.
		+	===Contact===
		+	*E-mail: roh329@korea.ac.kr, roh329@gmail.com
		+	*SNS
		+	**[http://www.cyworld.com/gnusnah/ Cyworld]
		+	**[https://twitter.com/Hanseong_Roh Twitter]
		+	**[http://www.facebook.com/hsroh Facebook]
		+	**[http://compbio.korea.ac.kr/roh329/ Blog]
-	==Research Interests==	+	==Research Topics==
-	*SNP란?[http://bric.postech.ac.kr/topic/58.htm]	+	*[[Human disease network]]
-	*iGEM catalog[http://parts.mit.edu/registry/index.php/Main_Page]	+	**Mobile Application Development (with B. Min) [[http://compbio.korea.ac.kr/~mbnmbn00/]]
-	*assembly [[Genome1]]	+	*Protein Domain Analysis
		+	**Mobile Application Development (with G. Jang)
		+	**Horizontal Gene Transfer (HGT) Analysis
		+	**[[Cazy |CAZY]]
		+	*Mycoremediation using Fungi (KUC collection) [[http://www.mycopedia.org/]]
		+	*Microbial Genome Assembly & Annotation [[Genome1]]
		+	**<i>Eubacterium limosum</i> KIST612 : [[genome_assembly]]
		+	**<i>Lactobacillus acidophilus</i> 30SC : [[genome_assembly2]]
		+	**<i>Verrucosispora</i> sp. AB-18-032 : [[genome_assembly3]]
		+	**<i>Vibrio</i> sp. strain EJY3
		+	*Xer A binding site prediction
		+	*iGEM
		+	**2009 [http://ung.igem.org/Team.cgi?id=271 KU_seoul],[[SynBig]]
		+	**2010 [http://2010.igem.org/Team:Korea_U_Seoul Korea_U_Seoul], [http://compbio.korea.ac.kr/synbio Team Board] - Silver medal
		+	**2011 iGEM instructor
		+	*[[Virus genome]]
		+	*[[Short read aligner comparison]]
		+	*RNA sequencing
-	== Resource for Hansung ==	+	==Publications==
-	*link[[ResourceforHS]]	+	*PMID 21036996 [http://jb.asm.org/cgi/content/abstract/193/1/307 Complete Genome Sequencing of A Carbon Monooxide Utilizing Acetogen, Eubacterium limosum KIST612]
-	*[http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download OMIM download]	+	*PMID 21478365 [http://jb.asm.org/cgi/content/abstract/193/11/2882 Complete Genome Sequencing of Lactobacillus acidophilus 30SC, Isolated from Swine Intestine]
-	*[http://www.nd.edu/~alb/Publication06/145-HumanDisease_PNAS-14My07-Proc/Suppl/ Human disease network raw data (물리학과 고광일 교수제공)]	+	*PMID 21551311 [http://jb.asm.org/cgi/content/abstract/193/13/3391 Genome Sequence of the Abyssomicin and Proximicin-Producing Marine Actinomycete Verrucosispora maris AB-18-032.]
-	*[http://www.diveintopython.org/ Dive into Python (Book)]	+	*PMID 22535948 [http://jb.asm.org/content/194/10/2773.abstract Genome Sequence of Vibrio sp. Strain EJY3, an Agarolytic Marine Bacterium Metabolizing 3,6-Anhydro-l-Galactose as a Sole Carbon Source.]
-	*[http://networkx.lanl.gov/wiki NetworkX Python network analysis tool]	+
-	**[[color code]]	+
-	**[[node labeling]]	+
-	*Python: multiple key values in 'dict' type [http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52219 cookbook]	+
-	*python 대소문자 전환 [http://mwultong.blogspot.com/2006/12/python-uppercase-lowercase-capitalize.html module : string]	+
-	----	+
-	*한글이 깨져 보일 때: View(보기)->Encoding(인코딩)->Korea(한국어)	+
-	----	+
-	*Gene Ontology Data	+
-	**Human GO annotation [http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.goa_human.gz?rev=HEAD Human GO Download]	+
-	**GO mapping [http://compbio.korea.ac.kr/~igchoi/goaslim.map GOA slim mapping]	+
-	**GO Slim [http://compbio.korea.ac.kr/~igchoi/goslim_goa.go GO Slim categories]	+
-	**Gene association DB data ([http://geneticassociationdb.nih.gov/cgi-bin/index.cgi NIH]) [http://compbio.korea.ac.kr/~igchoi/all.xls.zip Download]	+
-	**먼저 molecular function만 고려해 보거라	+
-	**고광일 교수님 데이터중에서 Gene ID가 Human Go annotation과 일치하는 것이 있으면 그것도 진행하도록 하자	+
-	***Conversion of Uniprot id to Unigene id & GO assignment [http://compbio.korea.ac.kr/~igchoi/p2g2go.tar.gz p2g2go.tar.gz]	+
-	**Minimum Spanning Tree - 전체 네트워크 그래프에서 minimum spanning tree를 구해볼것	+
-	**Clique - 전체 네트워크 그래프에서 Cliques들을 구해볼것	+
-	----	+
-	*Cytoscape[http://www.cytoscape.org/ homepage]	+
-	**[http://www.cytoscape.org/manual/Cytoscape2_5Manual.html manual]	+
-	----	+
-	*EST analysis	+
-	**Hitchhiker's guide for EST anlysis ([[media:estguide.pdf|PDF]])	+
-	----	+
-	*wiki [http://wiki.kldp.org/wiki.php/%C0%A7%C5%B0%BB%E7%BF%EB%B9%FD manual]	+
-	==Reporte Progress==	+	==Posters==
-	[http://compbio.korea.ac.kr/wiki/images/0/0b/Chart.JPG GAD]	+
-	[http://microbio.korea.ac.kr/tc/roh329/attachment/1054936023.xlsx GAD analysis]	+	==Management==
		+	===Computing system===
		+	*[[NAS]]
		+	*[[Panpyro]]
		+	*[[Panflam]]
		+	*[[Compbio]]
-	[http://microbio.korea.ac.kr/tc/roh329/attachment/1175449714.xlsx GAD-2]	+	== Resources ==
-		+	*[[ResourceforHS]]
-	[http://microbio.korea.ac.kr/tc/roh329/attachment/1251236699.xxx ontology]	+
-		+
-	==For Fun==	+
-	Win XP Games's [http://jeongsw.tistory.com/110 easter egg]	+

---

Latest revision as of 02:26, 17 July 2012

Contents 1 Introduction 1.1 Contact 2 Research Topics 3 Publications 4 Posters 5 Management 5.1 Computing system 6 Resources

Introduction

• 2005~2009 B. Tech in Biotech.: Korea Univ.

Contact

• E-mail: roh329@korea.ac.kr, roh329@gmail.com
• SNS
  • Cyworld
  • Twitter
  • Facebook
  • Blog

Research Topics

• Human disease network
  • Mobile Application Development (with B. Min) [[1]]
• Protein Domain Analysis
  • Mobile Application Development (with G. Jang)
  • Horizontal Gene Transfer (HGT) Analysis
  • CAZY
• Mycoremediation using Fungi (KUC collection) [[2]]
• Microbial Genome Assembly & Annotation Genome1
  • Eubacterium limosum KIST612 : genome_assembly
  • Lactobacillus acidophilus 30SC : genome_assembly2
  • Verrucosispora sp. AB-18-032 : genome_assembly3
  • Vibrio sp. strain EJY3
• Xer A binding site prediction
• iGEM
  • 2009 KU_seoul,SynBig
  • 2010 Korea_U_Seoul, Team Board - Silver medal
  • 2011 iGEM instructor
• Virus genome
• Short read aligner comparison
• RNA sequencing

Publications

• PMID 21036996 Complete Genome Sequencing of A Carbon Monooxide Utilizing Acetogen, Eubacterium limosum KIST612
• PMID 21478365 Complete Genome Sequencing of Lactobacillus acidophilus 30SC, Isolated from Swine Intestine
• PMID 21551311 Genome Sequence of the Abyssomicin and Proximicin-Producing Marine Actinomycete Verrucosispora maris AB-18-032.
• PMID 22535948 Genome Sequence of Vibrio sp. Strain EJY3, an Agarolytic Marine Bacterium Metabolizing 3,6-Anhydro-l-Galactose as a Sole Carbon Source.

Posters

Management

Computing system

• NAS
• Panpyro
• Panflam
• Compbio

Resources

• ResourceforHS