Primer Verrucosispora gap
From CSBLwiki
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==Primer Naming Format== | ==Primer Naming Format== | ||
- | *>[scaffold #]_[Front Contig #]_[Back Contig #]_[primer postion from Gap(Ns)(bp)] | + | *>[scaffold #]_[Front Contig #]_[Back Contig #]_[primer postion from Gap(Ns)(bp)]_[Forward/Reverse] |
- | ex) > | + | ex) >scaffold00001_1_2_1105_F, >scaffold00001_1_2_529_R |
5' contig1 3' contig2 | 5' contig1 3' contig2 |
Revision as of 12:19, 3 November 2010
Primer Naming Format
- >[scaffold #]_[Front Contig #]_[Back Contig #]_[primer postion from Gap(Ns)(bp)]_[Forward/Reverse]
ex) >scaffold00001_1_2_1105_F, >scaffold00001_1_2_529_R 5' contig1 3' contig2 --------CTCAGGTCAGGCAGGCGTGATGATCTCTTC----------------NNNNNNNNN-------------------------------------- TACTAACCTCGGGTCGGCGTGAGAGGAGATTG 3' 5' 1105bp 529bp
List of primer
- By Using Primer3
- "Can't find proper primer" means Primer3 couldn't found primer which satisfies several conditions (length, GC contents, Tm, complementarity between primers and complementarity between chromosome and 3' of primer).
>scaffold00001_1_2_1105 CTCAGGTCAGGCAGGCGTGATGATCTCTTC >scaffold00001_1_2_529 TACTAACCTCGGGTCGGCGTGAGAGGAGATTG >scaffold00001_2_3_751 CAGAACTGGAGAACGTCCATGCTCGAGAAC >scaffold00001_2_3_1360 TCGATCACCAGCTCACGGAAGTCCTCGTTG >scaffold00001_3_4_586 GTCAGTGCCGATCAGGATGTTGTCCAC >scaffold00001_3_4_183 ATCAACTGCCAGAACTCGTCGGTCCTCATG >scaffold00001_4_5_568 TACGTCGAGGAACTGGGCGACTTCAAGACC >scaffold00001_4_5_831 GATCTGCACGTTGACCAGGTGGTTG >scaffold00001_5_6_1090 GTTGAAGAAGCTGACCAGTCCGACGAGTAC >scaffold00001_5_6_374 CGGGTCTTCTTCGAGATGGACATCTACTG >scaffold00001_6_7_939 ATCAGCGGTTACGTCTGGTGGTGAC >scaffold00001_6_7_870 CGATCTCCACGTTTGACAGGATGCTCTG >scaffold00001_7_8_872 CTGCAACACGAACTGGTCTCGCTCAAC >scaffold00001_7_8_546 CATCAGTTTGATCGGCGAGACGTGCGAGAC >scaffold00001_8_9_527 CTGAGTAATCTTGGCCGCTGTGACAACC >scaffold00001_8_9_358 ATGGACATGGTCCACCTGGTCATCG >scaffold00001_9_10_1135 AGACCGGATTGAGTGCTTCCTCTGCTGGTG >scaffold00001_9_10_1408 CGACCAATTTCCGACGAGGTGACATTC >scaffold00001_10_11_533 TTCGCCACCACCGGTCTAGGATGAGAGATC >scaffold00001_10_11_191 ATTCCTCGCGCAGTTGACCCAGTTC >scaffold00001_11_12_354 AAGGTCAGGATGGCGGTGAACACCTTGGTC >scaffold00001_11_12_350 CATGTTGTCGCTGACCTTCGCGATAC >scaffold00001_12_13_1313 TTTCAGGCTTTGAGGATCGAGGTAAACAGG >scaffold00001_12_13_315 TCGCATCTTCTCAGCCAGTTCCGAG >scaffold00001_13_14_961 GTCATCGGACAGCCGATTCTTCGACGACTG >scaffold00001_13_14_1221 AGTCGTCGAAGCGCAGAAGGTACATGTAGG >scaffold00001_14_15_1407 CTTGTTTCGATAGCATTACCGCCCAGTAAC >scaffold00001_14_15_533 GTACTCGTCGAAGGTGGACACGTTCACTC >scaffold00001_15_16_126613 Can't find proper primer >scaffold00001_15_16_569 CTTCTACCACGACACACACACCGATCC >scaffold00001_16_17_1785 CTCGAAGACGTCAACAACCACACCAATCTG >scaffold00001_16_17_478 CTCGTAACTCTCCATCGGTTCTCCAGTAAC >scaffold00001_17_18_225 GATCGTGACGAACGTGAAGGTCCAC >scaffold00001_17_18_408 CAGATCCGGTACAGCTCCTTGTATTCCAG >scaffold00001_18_19_320 CAGATAGATGGTGAAGTCAGGACGACGG >scaffold00001_18_19_177 ATGAACTTTCCACCGATGCCGGTCGTCTTC >scaffold00001_19_20_313 GTGTCGTTGTAGGCGATGAGGAGTTGGTGG >scaffold00001_19_20_627 CACTCCAACTGGAGCACGATCTTGACG >scaffold00001_20_21_312 TGTCGTTGTAGGCGACGAGGAGCTGATCAC >scaffold00001_20_21_227 TCACCTACACCGACTACACCCTCTG >scaffold00001_21_22_243 AAGGACGGACGTGGACATCGATCAGCAATC >scaffold00001_21_22_1379 AGGACTCCTGTACGTCGATCACGACGAGTG >scaffold00001_22_23_238 GTTTCACTCATCGGTGTACCCTCCCGATC >scaffold00001_22_23_248 ATCCCGAAGTTCGTCATCGAGAACGTCTCC >scaffold00001_23_24_410 ACTGACCACGGTGCAGCTCTACTTCAC >scaffold00001_23_24_1184 AGCGTGTAGTCGGCGGTATACACCTTC >scaffold00001_24_25_444 ATTCGACGGGCAGGACGTCAACAAG >scaffold00001_24_25_279 GAAGTCGGAGTGGAACAGCTTGTAGGAGAC >scaffold00001_25_26_206 CTCGTCGAGGGGATCAACACAAGTGGAATC >scaffold00001_25_26_184 GTACCGTCGACAAGCAACTCCTGATCGTC >scaffold00001_26_27_369 ATGAGCGAGCAGGTCTTCCTCCTAC >scaffold00001_26_27_706 GAACACGCCGTAGTTGTTCAGCGTGAAG >scaffold00001_27_28_280 TGACGTGAGGGGACTACGGATGTAC >scaffold00001_27_28_260 ACTTCGACAGGTAGGCCTTGCAGAG >scaffold00001_28_29_209 TCTACGGTGGGTTGCACTGGTTTAGAGAAG >scaffold00001_28_29_357 TACAGCTGAAGGATCTTCTCGTCGAGGACC >scaffold00001_29_30_1643 CCGATCCAGGCGAAGATCAGATTGGTC >scaffold00001_29_30_767 ATCGACATAGCGCTCCAACAGATCGGTGAC >scaffold00001_30_31_237 CACCACACGTTGTACGTCTTCGTGCTCTAC >scaffold00001_30_31_284 CATCCCCCAAGTCTTTCCTCTCATGCTCTG >scaffold00001_31_32_566 AAACGAGCCGTACAACGGGCAACTG >scaffold00001_31_32_182 TGATCGGCATCTTCCTGACCTCGTC >scaffold00001_32_33_311 ATTCTGAGTCGAGTGGAGGCAAGACTGCTG >scaffold00001_32_33_182 GAAGGGTCCGGCGTTGTCAATGTAGCGTTG >scaffold00001_33_34_795 GTCGACGACGAGAATCCGGTTCATG >scaffold00001_33_34_365 GTTCCCTGCTGCTGAACTGGTTCTTCAC >scaffold00001_34_35_1062 ATCTTCGACCGGACCATTTGGAGTCGGACC >scaffold00001_34_35_2096 AGTCGTCGTCGTCGAACATCGTGAC >scaffold00001_35_36_685 GTCGTTCAGGTTCAGGTAGAACTCGGTGAC >scaffold00001_35_36_0 Can't find proper primer >scaffold00001_36_37_1058 GTCGTTGTATTCGACCGGCGGTTTC >scaffold00001_36_37_740 ATACGGCTTCGTCGAGAACCTGACC >scaffold00001_37_38_498 TTCGACGAACTGTGGCAACGCTTCTCC >scaffold00001_37_38_562 AGGACGTCATGCACGGTCAACACAC >scaffold00001_38_39_625 TTCCAGCAGGGCGAACATGTCGTTGAG >scaffold00001_38_39_672 CTCTTCGACGAGATCATCCAGGTGCTG >scaffold00001_39_40_203 GCCAGCCCACAATTTCATCGATCAACAC >scaffold00001_39_40_425 ACCTGCAACTGACTCGGCTGGCTATAGCTG >scaffold00001_40_41_522 GACTACAAGCCGGAGAACGTGCTCATCTC >scaffold00001_40_41_660 GTGCAGAAGGGATAGAGGGTGACGTAC >scaffold00001_41_42_205 ACCGAAGCAGTCGAAGACGGTACAC >scaffold00001_41_42_564 GTCATGCTCTACCCGAACATCTTCCACGAC >scaffold00001_42_43_389 TAAAATCTGTGATCTGGGCTAACCTTGGGG >scaffold00001_42_43_223 GTGATCGGTGTGTTCGTGGCTGACCAGTAC >scaffold00001_43_44_440 CTCGGAGGAAAACGGTGAACAGTCAGCAAC >scaffold00001_43_44_563 TGAACGCCTCCACCCAGCATTTGATCACAG >scaffold00001_44_45_93801 Can't find proper primer >scaffold00001_44_45_485 GTGTTGCGATCGGATTCGTAGCTGAC >scaffold00001_45_46_401 GGATCAGCTCCGGATAGTTGAAGTCGTC >scaffold00001_45_46_423 ACAACGAGGACTTCGACAACGGCTTCAAGG >scaffold00001_46_47_381 TAGTCACATGCGTAAACTCCTGATCTCAGC >scaffold00001_46_47_845 CTCGTCGTCTCTGGTGTAGAAGTCGTCCTG >scaffold00001_47_48_1970 GACGACTACCTGCGTAAACCCTTCGACCTG >scaffold00001_47_48_1052 TACCTGCTCACCAATCTGCTTGTGGGTCTG >scaffold00001_48_49_1639 GATGTTCATCGACCTGGAGAACGTGC >scaffold00001_48_49_229 CTCATCGTTCGAAGCGAGGTAACGTCCTC >scaffold00001_49_50_1297 CAGGGTTTCCTGAGCCACCTTGAAC >scaffold00001_49_50_822 CTGTTCTCCCAGGACCCGATCTTCAACTC >scaffold00001_50_51_227 CGTGCCATGTTCTGAACGAGAACGATC >scaffold00001_50_51_860 GTGACCAGCGAGTGAATCTTGTCGCGTTG >scaffold00001_51_52_1410 GATGTCCACGTCGTACGCCATGCTGTTGTC >scaffold00001_51_52_509 CCTGATTCACCTGATTCGTCCACCAGTTC >scaffold00001_52_53_361 GTCATCCACACATGGCATTCTGTGACCG >scaffold00001_52_53_353 AGGATGGCGTAATCCGCGATGATGG >scaffold00001_53_54_414 TTCTGGAAGACCATCTGCAGACCGATCTCG >scaffold00001_53_54_823 TACGCGAAGGGACGTTAGAGATGGCAC >scaffold00001_54_55_1250 CTGGAACCGGATGATGTTGGAGTCCTC >scaffold00001_54_55_176 GTACCGAGGAACTGATCGACCTCTC >scaffold00001_55_56_239 CACCTGACCTCTGACAATGAACGCCGAAAG >scaffold00001_55_56_206 GATTGGCTTCTATACAAACTAAGGTGGCGC >scaffold00001_56_57_412 GTACTCACGATGGTCCTTCTCCTCGTTGC >scaffold00001_56_57_184 CAAACCGGTGGTCGGGCTGATCATGTATTC >scaffold00001_57_58_1204 TCATGCTGTCCGTATCCATTTAGGACCTTC >scaffold00001_57_58_939 TTCTACCGTGCCTACTTCGAGACCGAC >scaffold00001_58_59_788 CAAAGCAAATCGGAGGGGACATGACG >scaffold00001_58_59_229 ACACGTTCGTCCGCAACAACGGATG >scaffold00001_59_60_1979 GTGACCAGCCAGGTCTGTTCGAATCTCAC >scaffold00001_59_60_581 GTCAACCAGATCGCCAACATCCGCTACTC >scaffold00001_60_61_755 GTACGGTTTCTGACCAACACCGACTCGAAG >scaffold00001_60_61_647 CCAACATCACCATCACGAACCTCGG >scaffold00001_61_62_285 TCAGGTTGAGATCGACCATCGCGAG >scaffold00001_61_62_383 TTGGATGACCTCACGCTGACCTTCGGATTG >scaffold00001_62_63_898 CTGATGATCAAGGTGTTGCGGCTGTC >scaffold00001_62_63_367 GTTGTAGCCGCCGAAGTCGTTCATGCTGAC >scaffold00001_63_64_711 ACGTAGTTCCCGACCGTAGAGCAGTTC >scaffold00001_63_64_1270 GTGCATCAGCAGTGCAAAT >scaffold00001_64_65_324 CTGGTGTGCTTTTCGGTTCGGGTAC >scaffold00001_64_65_297 AACGCCCACGTCATCCTCGAAGAAC >scaffold00001_65_66_1986 GATCAGTCCGGCGATCGACGAGTAGAGAAC >scaffold00001_65_66_1292 GTTGCTGCTGGAAGTGGCATGGGAAAC >scaffold00001_66_67_428 CTTCGTCACTGGCTGTGTCAAGGTCAAC >scaffold00001_66_67_346 ACTGTTCCTGCTGTACTCCTCGGTG >scaffold00001_67_68_262 TGACCGTTGCGACCAGATATTCGGCGATTG >scaffold00001_67_68_0 Can't find proper primer >scaffold00001_68_69_5187 Can't find proper primer >scaffold00001_68_69_0 Can't find proper primer >scaffold00001_69_70_254 CTTCGACATGGAGGCAGTGCTTGAGAACTC >scaffold00001_69_70_318 AGTGAGGAGGAACAGTTCTACAATGGTGTG >scaffold00001_70_71_240 CATTCGGCGTGGTAAAGACCCACTGGTAC >scaffold00001_70_71_233 ATCGATGACCCTCCAAGACAGACCTCATTG >scaffold00001_71_72_349 AACCCACGCATCCCACTCAACGAGCTGAAC >scaffold00001_71_72_0 Can't find proper primer >scaffold00001_72_73_2964 Can't find proper primer >scaffold00001_72_73_0 Can't find proper primer >scaffold00001_73_74_2968 Can't find proper primer >scaffold00001_73_74_0 Can't find proper primer >scaffold00001_74_75_356 GTGTTCACCGGCGTGATGTACAACGACTAC >scaffold00001_74_75_0 Can't find proper primer >scaffold00001_75_76_788 GTCGACGTTTCATCACGTCACTGGGTG >scaffold00001_75_76_0 Can't find proper primer >scaffold00001_76_77_1854 GTGATCAAGGTGATCGAAGCCCTGC >scaffold00001_76_77_535 ATCTACAACCACCTGGGCGGCAAGGAGAAC >scaffold00001_77_78_625 CAATCTCATGGGGTGCCTTCGTCGATC >scaffold00001_77_78_349 CTCGGCAACCGACTGTGGAACAACATC >scaffold00001_78_79_237 CTACCGCTCAATACGCCAACGTCACATC >scaffold00001_78_79_276 GAAATGCCGTCACTCTCCGTAGATGTCC >scaffold00001_79_80_301 TACGTTTGGCTCAACACCCCACGCGAGATG >scaffold00001_79_80_212 GTCGCTGATCATGGTTCGGTAGACGATGTC >scaffold00001_80_81_426 CACTGCCCAAACCGATCTATCCGACGTTC >scaffold00001_80_81_202 GATCCAAGCTGTCTTAACGAGGAGTTGCC >scaffold00001_81_82_751 CAAATCCGGGCACCTCGAACTCAAG >scaffold00001_81_82_233 AACACCACCACCCCCGAGTAGCAGACAACAAC >scaffold00001_82_83_253 CAAGGTCATCGTCAGCGGTGGATTG >scaffold00001_82_83_302 AGATCCGGATACTGCGCTGGGAAAC >scaffold00001_83_84_243 GTGGGGCAAGTGCTGGAGTTTGATTCAC >scaffold00001_83_84_182 GTGGACGGACCAGTCGTGATGTTCGATTC >scaffold00001_84_85_413 TTTACCCTCGATCCGGCAGATGAAGCCCTC >scaffold00001_84_85_726 GACCCGTCCAACACCTTCGATCAGAGCTTC >scaffold00001_85_86_207 GCACGGTTTAGGAAGTGTGGACACG >scaffold00001_85_86_191 CCGAAGTGTGCAAACGTTGTCTTTACGTC >scaffold00001_86_87_218 TCAACAACCCAGTGAACACCGAGGACGTAC >scaffold00001_86_87_256 GTCGAGGCCATTGAGAAAGCGATGTAC >scaffold00001_87_88_204 GAAGTGATCACGCGATCCACGGGATTCCAC >scaffold00001_87_88_267 AGCTTCCAGACCCTGGTCAACAGTC >scaffold00001_88_89_1973 AGTAGCCGATGACCCCGTTGAGTTG >scaffold00001_88_89_463 CAGGTGTTCAACCTCGCCCAGACCTTCTAC >scaffold00001_89_90_613 ATGACCTTCGTGAAACTGACCTTCTCGCTG >scaffold00001_89_90_528 GACAAGGACTCCGCCAAGAAGGACGAATC >scaffold00003_1_2_276 GACGTGTACATCTCGAACATCTCGCGG >scaffold00003_1_2_427 CCGTCCTACCTTCCTTTGTGGTTCCTTC >scaffold00003_2_3_232 CAAGGGAGAGTTCCGTTACGACCACAG >scaffold00003_2_3_460 TTGATCAGCCGGCACAGCAACAAGGTGGTG >scaffold00003_3_4_218 ACAAGCTCATTGCCTACTAGATCGACTTCG >scaffold00003_3_4_981 GAAAGACGAATCCCGTGAGAATCGTGGTG >scaffold00003_4_5_574 ATCGACCTGGTGCACGCGAACAACTCCAAG >scaffold00003_4_5_289 GAAGAAGGCGTTGGAGTGCCACAGTTG >scaffold00003_5_6_207 GAGCTTTCTGTGATCTGTTGCCGAATTGG >scaffold00003_5_6_263 ATGGCATCCCTCAACCACTACCACC >scaffold00003_6_7_918 ATGCTCAGTCCGGGAGTACAGCTCGGTAAC >scaffold00003_6_7_220 TTCAGCCTGTAGGAAACCACGCCCGAACAG >scaffold00003_7_8_365 ATCCGACGAGTACGACATCCACCTG >scaffold00003_7_8_601 CAGACCAACTACGCCACAAGCAAGG >scaffold00003_8_9_472 CTGTTCCAGACCTTCCTCACCGTGCTTGAC >scaffold00003_8_9_218 CTTATGCCCTGACAGAAGGTGCAAGATCAG >scaffold00003_9_10_376 CATGCACAAGCAGGACCTCATCGAG >scaffold00003_9_10_212 TTTCCGTTGAGCCGCCACTCGTACTTGTAG >scaffold00003_10_11_1436 TGGTCCTGCCGTACTTCCTGATCACCACTG >scaffold00003_10_11_232 GATGGGACAGACTTCGTACACCGGTTG >scaffold00003_11_12_266 CTGTATTGATGATCCACTCGCTGCCGCTC >scaffold00003_11_12_1184 TACAGTGATCGGCCGTTGTTGGAGTGTGTG >scaffold00003_12_13_2070 CTCCAGCAGGGTTTCATCGATTCGGTAG >scaffold00003_12_13_324 CTGGACCAGTTCACCCTCCAGATCATG >scaffold00003_13_14_463 CTGGTGTCACACAACGAAAAGGACCTGACC >scaffold00003_13_14_304 GAAGAAGTCGTCCTTCTCCTTGACCGACAG >scaffold00003_14_15_358 GCACACAACATCCAAGATCATTGTTGATCG >scaffold00003_14_15_518 AATACCGCTACGGTGCTGGAACCGATGTAC >scaffold00003_15_16_227 GTTTCTGGACAAGTACGGTTTCGGGACC >scaffold00003_15_16_241 CTCACCTCGTCTCCCAAGGCGATCTGAAAC >scaffold00003_16_17_285 CTTCCTACCACCGCCGTCCACAGTGTTTAG >scaffold00003_16_17_503 TACCTGTGGCCCCAAAGCTACTACCTG >scaffold00003_17_18_313 CTGAACGAGACGGAATGGGAGATCCTCACC >scaffold00003_17_18_222 GACATCACCATCCAGGCAGAGAACATGCTG >scaffold00003_18_19_746 GTTGCTTCGAATCTGGTGACGGGAG >scaffold00003_18_19_471 GTATACCGCAACATCGGCGAAATGAAGTC >scaffold00003_19_20_655 GAAGGAACGGCAACTTTCGGTCACGGTAC >scaffold00003_19_20_485 CAAGGAGACCGTCTACAAGATCTGGCATC >scaffold00003_20_21_404 AGCTGTTCGACAACGCCACCGCATTCTCAC >scaffold00003_20_21_200 GAAGATCGGCAGCTCCATCGTCTCATC >scaffold00003_21_22_1034 GAAGTAACCGGTGGTGTTTTCGGCCAG >scaffold00003_21_22_354 ATCTCGCCGGTTACAAGCAGATCCTC >scaffold00003_22_23_1299 TTCAGATGGTTAAGGACAGCTTCATGAGCG >scaffold00003_22_23_368 ACGTGATCGGTGGGAACTTCGACTC >scaffold00003_23_24_235 CCCAGGGAATATAACGATGGTTCAGGTCAG >scaffold00003_23_24_1082 CACCACCCGCTCGTTGGTGAACAGATAGTG >scaffold00003_24_25_274 AAGAAGCTCGAAGTCCCGGTCAAGAAGATC >scaffold00003_24_25_666 TATCGTTCGCGTCGATGGCCGACAACATTG >scaffold00003_25_26_360 GAAAGGCTGACCATCTACCCGGAGTAC >scaffold00003_25_26_632 ATCCACGTGTCCGTACATCATCGTGGAGC >scaffold00003_26_27_1276 ATCCTGGAAATCAAGATCCTGAACCAGTCC >scaffold00003_26_27_235 TTGTCCTGGAACAGATAGAAGTCGTGGCCG >scaffold00003_27_28_833 GTACTCGCCGACTTTCCCGTTCTCATC >scaffold00003_27_28_474 GTACACCTCGTGCTCGGGACACAAATGGTC >scaffold00003_28_29_210 GTACACGTGCCGTTCCCGTTTCTGGTGAAC >scaffold00003_28_29_581 GAAGCTGTACCAGCTCCAGGACAACGACTG >scaffold00003_29_30_703 TCAGCGATTCAGAGGTCCCGATCAGAGGTC >scaffold00003_29_30_1341 TACCTGCATACCGTACGTGGAGTCG >scaffold00003_30_31_256 TTCCGGGGATGAGTAGCCGACCAATTGTCC >scaffold00003_30_31_1239 GATCACCGGTTGGTAGACCAGATCCAG >scaffold00003_31_32_351 CACAAATTGAACTTGAGCTGGGATGTCAGG >scaffold00003_31_32_565 CAGGATGACAGTGTGAGTCAGCCATGGAC >scaffold00003_32_33_376 AGATCGACGAGCTCAACGTCTATCCG >scaffold00003_32_33_1069 GTCATTCGACACCCACCAGCAACGGATAG >scaffold00003_33_34_1930 AAGCTCGACGCGATGCAGACCAACCTGAAC >scaffold00003_33_34_485 CTCCAACTGCTCGGAGAGGAACTTGTAAC >scaffold00003_34_35_491 GAACGAGACCAGGAGACATAGTGGCGAGTC >scaffold00003_34_35_222 ATCTCCGCAGTCATATCGGTACGGG >scaffold00003_35_36_707 AAGTTGAAGGAAATGGGCGAGTTCGTGAAG >scaffold00003_35_36_202 TTGATCTTGTCGGCGAAGTCCGACAGCGAG >scaffold00003_36_37_355 CTGCTCTTCCTCGGCATGCTCATGTTC >scaffold00003_36_37_430 ATAGCCCGCCCACTGCATGACAAAC >scaffold00003_37_38_542 CGACTGGGAGTACTACATCGGTAACACC >scaffold00003_37_38_565 GCACTGCGTGAACTCCCTTTCCATC >scaffold00003_38_39_791 AACTGTCGACGAAGAACCGCGTCATGAGAG >scaffold00003_38_39_613 GTACGAGCAGTTCACCAGTTGCGTG >scaffold00003_39_40_351 CACTTGTCTTCTCCTCCGGATACCTGG >scaffold00003_39_40_333 CTGATCCGTCATGGCGCACATTCCACGATG >scaffold00003_40_41_413 GTAGGTCTGTGCCTGGTGGTTATGCCGATG >scaffold00003_40_41_370 AAGTAGTGCGGCTCCTGCCATCTTCGTTTG >scaffold00003_41_42_440 CTTCAGGTGATCGGCTCGATGGTAGGTCTG >scaffold00003_41_42_495 CGTTCTTCACCCGGCTTCACATACTCG >scaffold00003_42_43_317 GTTCCTGTCCTCGTGCAGCACAATTCGATC >scaffold00003_42_43_284 ATCATCGTGGTCTTGTACGGCTCGCCCTTGAC >scaffold00003_43_44_737 ATCGTTCGCAGCGGCATCGATTCAC >scaffold00003_43_44_992 TGAAGCTGACCAAGCTGGTGGTCTC >scaffold00003_44_45_77029 Can't find proper primer >scaffold00003_44_45_224 AAGATCACCACGGCGTCGACACAGCTCAAC >scaffold00003_45_46_422 GTGATGCCCTCGGATCCCAGTTCTTCGTAC >scaffold00003_45_46_399 AACTCGGTCAAGCTCGAGTTCCTGGTG >scaffold00003_46_47_258 GACCTGCTGAGTGGATCATCAACCTATCG >scaffold00003_46_47_510 GTTGTAACCCATGGCTGACGAAGTAGGG >scaffold00003_47_48_427 CATCACGGCGAACAACAACCAGACCTAC >scaffold00003_47_48_271 GAACAACGGCATGAGGTCCTTGAACATGAC >scaffold00003_48_49_532 GAAGGGTCAACAGTGAGATCGCCTGGTTC >scaffold00003_48_49_741 TGTAGCTGCCCTTCTCCTCCTGTTC >scaffold00003_49_50_208 GTGGTGTGCATCGTGCAGATCCCGTTCTAC >scaffold00003_49_50_1069 CGCTCATCAGCAACATGCTCTGCAC >scaffold00003_50_51_1445 TGGCGTACCTGGAGAAGGTGGTTTC >scaffold00003_50_51_439 CAATGGCACCCTCACATATGGCAGATAATTG >scaffold00004_1_2_381 GAACACGTCACAACCGTGCTTCCAG >scaffold00004_1_2_882 ATCAAGGTACTGCGGCTCAGTGAGAGCCTG >scaffold00004_2_3_250 GTTGAACCGTCTGAACGACCGAGGAAG >scaffold00004_2_3_411 TGTTGTCGGGGTAGGTGGGTAAACG >scaffold00004_3_4_333 TGACTTCTCCGACCAGATCGCACACCTGTC >scaffold00004_3_4_675 GAGCTTCTCCTTGTGCTGGGTCAAC >scaffold00004_4_5_297 GGGAGGTTGTAGATCACGAACTGGATGTAG >scaffold00004_4_5_180 CAGAACGAGTCCTACAACGGGAACCTTTC >scaffold00004_5_6_411 GAGATCATGTCGCTGGGCACCAATC >scaffold00004_5_6_891 GACATCGTGACCACCGTACTGGTCAAC >scaffold00004_6_7_257 CGCGTTGAAAAACCGGGCGATATCC >scaffold00004_6_7_545 GTCTTCGTGGTCAACAAGGCCGATC >scaffold00004_7_8_584 TGATCAACGAGGCGTGCAACGGTAG >scaffold00004_7_8_419 ATGATCGACACCGTTACGGCGAGATGG >scaffold00004_8_9_447 GAACCTGCTGTTCATGGTCGGTCTG >scaffold00004_8_9_234 ACAGTGGTCTCCGTCTACAGTCCAC >scaffold00004_9_10_1726 TAGAGGGTCAACGGTTCGTCACCAG >scaffold00004_9_10_313 GTCAAGGATGACTGCGTGACTGGCTAC >scaffold00004_10_11_783 AGAGCAGTTCGAGGATGTTGGGGTC >scaffold00004_10_11_256 GCCGACTTCTACGTACTGCTGTCCATG >scaffold00004_11_12_1607 TACCGACAAGTGAGAGGACGACGTG >scaffold00004_11_12_704 GACCTGATCGCGGTGATTGGTTGAC >scaffold00004_12_13_750 TCGATGGACATGCTCTCCTCCGAGATCGTC >scaffold00004_12_13_902 TGATCAATATGCGAGCGTCCGAAAAAGATC >scaffold00004_13_14_550 GAGCACATCAAGATCACTGACAATGGGATC >scaffold00004_13_14_243 AACACTCCGAAATCCGCTGGCTCTC >scaffold00004_14_15_556 CTGGTGGGACTCGTTGAGCATCCAATG >scaffold00004_14_15_220 CCGAGGGAAAGAACCGGACATTGTG >scaffold00004_15_16_1515 CTTCACCGGCCTGTTCTTCGTCATCAC >scaffold00004_15_16_379 GATCGACAACCAGCCGAAGACGATG >scaffold00004_16_17_236 GGTTCGACACCAGGATTTCGAGGTCAC >scaffold00004_16_17_467 GATCTGGTTCCACATCTGTCCCTGGTG >scaffold00004_17_18_352 TGGAGGCATGACTTCCACACCTCAC >scaffold00004_17_18_720 CCAACATCAAGAGCCACCACAACGTC >scaffold00004_18_19_226 GTGTGATCGACACGGTTACGTCGAAG >scaffold00004_18_19_545 CTGGTTCCGTCGACGAGGTGATAAGAAG >scaffold00004_19_20_273 GTCTCCTTGGTCGAGGTGCTGTTCTGAGTC >scaffold00004_19_20_878 GACGAGCAACTGGACTCGCTGAACAAG >scaffold00004_20_21_1405 CAGTTGGCCCTGCTTATCCTGCCGATGATG >scaffold00004_20_21_521 TGAAGATCACCCAGGATCTCAAGGAGTACG >scaffold00004_21_22_386 GAAGACTTCGCCACCGAATACCTCAGC >scaffold00004_21_22_182 TTCGACGTACACACCACCCTCGCCGTAATC >scaffold00004_22_23_594 AATTCAGCGGACAGCGGTACGAGGGTGTAG >scaffold00004_22_23_1225 AACAGGACCTGCTCGACAACAAGATCAAG >scaffold00004_23_24_712 AACATGGGTGATACTCGACGGGTGGCAGAC >scaffold00004_23_24_552 GTTGCCTTTGCACAGGTAGATCCCG >scaffold00004_24_25_667 CAAGCCATGTCGAAGCAGCACTACTC >scaffold00004_24_25_322 AAGCACCTGCTGTTCACAAGCGAACTGATC >scaffold00004_25_26_542 GCAGATCGACGAGTACCTGGAGTTCTAC >scaffold00004_25_26_235 ATGAAGATCAGGAAGATCGGCGCGAACAGC >scaffold00004_26_27_255 GATCGTTCGACTACCCACAATCCGCAGATC >scaffold00004_26_27_671 GGTAGAGCAGCCATTCCAGTTCCTGTG >scaffold00004_27_28_577 CTGTTCACCGAGGAGGGCGAGTTCTTCTTC >scaffold00004_27_28_485 GAAAACGGGGTGTTCCAGCTTCATCGCTTC >scaffold00004_28_29_1409 AACCGACACACCTGCAGTTGCCGTACCAAC >scaffold00004_28_29_207 TACTCCGGGATAAGCAAGGCTGAGCTG >scaffold00004_29_30_278 CATTTGTGACACCTGTCCAGCAGTACG >scaffold00004_29_30_264 TCTGGTGAGCCGACAGGTATTCCTC >scaffold00004_30_31_444 ACCTTCTTGCTCTTACGGCCCACCTTG >scaffold00004_30_31_747 GAGCCTCCGGAGTACGTCAAGTTCATTTTC