UCSF chimera

From CSBLwiki

Revision as of 16:04, 13 October 2010 (view source) Igchoi (Talk | contribs) (→Examples) ← Older edit		Revision as of 16:28, 1 June 2011 (view source) Igchoi (Talk | contribs) (→Examples) Newer edit →
Line 16:		Line 16:
	sel ligand zr<3.5 & solvent zr<3.5 & ~ligand & ~solvent		sel ligand zr<3.5 & solvent zr<3.5 & ~ligand & ~solvent
	</pre>		</pre>
		+	<pre>
		+	match #3:1001@O5,C1,C2,O5,C3,C4,O3 #2:375.A@O5,C5,C4,O5,C3,C2,O3
		+	</pre>
		+
		+
	*Movie [http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/movie.html commands]		*Movie [http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/movie.html commands]
	**[http://www.cgl.ucsf.edu/chimera/tutorials/movies09/moviemaking.html '09 tutorial]		**[http://www.cgl.ucsf.edu/chimera/tutorials/movies09/moviemaking.html '09 tutorial]

---

Revision as of 16:28, 1 June 2011

Popular command

• focus
• alias

Examples

• NABH

alias active1 #0:52,207,265;
alias contact1 #0:222.B,224.B,235.B,264.B;
alias contact2 #0:358-359;
alias contact #0:222,224,235,264,359,361;
alias gal #0:gla;
alias active ligand z<3.5 & ~ligand & ~solvent;
alias active ligand z<3.5 & ~ligand & ~solvent & without CA/C1';
alias loop #:351-366;
select active & without CA/C1';
sel ligand zr<3.5 & solvent zr<3.5 & ~ligand & ~solvent

match #3:1001@O5,C1,C2,O5,C3,C4,O3 #2:375.A@O5,C5,C4,O5,C3,C2,O3

• Movie commands
  • '09 tutorial