UCSF chimera

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	==Popular command==		==Popular command==
-	*focus	+	:focus
-	*alias	+	:alias
		+	==Presets==
		+	:for residues within 3.6 Å of a ligand residue or metal ion ( ligand zr<3.6)
		+
	==Examples==		==Examples==
-	*NABH	+	:NABH
	<pre>		<pre>
	alias active1 #0:52,207,265;		alias active1 #0:52,207,265;

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Revision as of 08:30, 11 July 2011

Popular command

focus

alias

Presets

for residues within 3.6 Å of a ligand residue or metal ion ( ligand zr<3.6)

Examples

NABH

alias active1 #0:52,207,265;
alias contact1 #0:222.B,224.B,235.B,264.B;
alias contact2 #0:358-359;
alias contact #0:222,224,235,264,359,361;
alias gal #0:gla;
alias active ligand z<3.5 & ~ligand & ~solvent;
alias active ligand z<3.5 & ~ligand & ~solvent & without CA/C1';
alias loop #:351-366;
select active & without CA/C1';
sel ligand zr<3.5 & solvent zr<3.5 & ~ligand & ~solvent

match #3:1001@O5,C1,C2,O5,C3,C4,O3 #2:375.A@O5,C5,C4,O5,C3,C2,O3

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