Open plaza

From CSBLwiki

Revision as of 04:49, 15 October 2009 (view source) Igchoi (Talk | contribs) (→X-ray crystallography) ← Older edit		Revision as of 04:56, 15 October 2009 (view source) Igchoi (Talk | contribs) (→X-ray crystallography) Newer edit →
Line 12:		Line 12:
	*Related programs are installed at ''panflam'' (linux machine; 2 CPU (8 cores))		*Related programs are installed at ''panflam'' (linux machine; 2 CPU (8 cores))
	<pre>/home/x-ray</pre>		<pre>/home/x-ray</pre>
-	*[http://www.ccp4.ac.uk/ CCP4] current release 1.6.2 (add a line into your .cshrc)	+	**[[x-ray programs]]
-	<pre>source /home/x-ray/ccp4-1.6.2/include/ccp4.setup</pre>	+	*Methods
-	*[http://cns-online.org/ CNS_solve]: current version 1.2 (Oct. 2009)	+	**[[Molecular replacement]]
-	<pre>source /home/x-ray/cns_solve_1.2/cns_solve.env</pre>	+
-		+
-	*[[Molecular replacement]]	+
	==Computing resources==		==Computing resources==

---

Revision as of 04:56, 15 October 2009

Contents 1 Protocols 2 Part list 3 X-ray crystallography 4 Computing resources 5 Unix & Programming 5.1 Unix 5.2 Python 5.3 Applications 6 Windows

Protocols

1. Molecular biology
2. Protein biochemistry
3. Chemistry

Part list

1. Plasmids
2. Strains
3. Parts Registry

X-ray crystallography

• Related programs are installed at panflam (linux machine; 2 CPU (8 cores))

/home/x-ray

• • x-ray programs
• Methods
  • Molecular replacement

Computing resources

1. Compbio
2. Microbio
3. Panpyro
4. Panflam

Unix & Programming

Unix

• Installing Compilers
• SSH - how to connect the Lab. PC from your home
• X11 connection
  • Easy safe way is to use SSH's X forwarding:

ssh -X me@remotemachine

• Your display will look to the remote machine like:

echo $DISPLAY
localhost:10.0
firefox --display=$DISPLAY &

xhost/export DISPLAY

• On your local machine:

xhost + remotemachine

• On the remote machine:

export DISPLAY=localhost:0.0

• After you're done, remove remote machine access from your xhost:

xhost -

• SCIM - Input Hangul
• Linux (Unix) commands
• The Linux Document Projects - Numerous useful documents & tutorials are available
• Change locale (language) for 'panpyro'

bash shell:
export LC_ALL=en_GB.ISO8859-1
export LANG=en_GB.ISO8859-1

Python

• BE.180 Biological Engineering Programming - Synthetic biology@MIT Check "Unix&Python" tutorials!
  • Python Cheat Sheet
  • Unix&Python tutorial

Applications

• MySQL
• Matlab
• R-project

---

• Hypergraph: EC class

Windows

• MS-Word - 편집시 변경내용 추적