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Revision as of 11:44, 10 April 2010 (view source) Igchoi (Talk | contribs) (→Software@CSBL for x-ray crystallography) ← Older edit		Revision as of 13:19, 20 April 2010 (view source) Igchoi (Talk | contribs) (→Python) Newer edit →
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	**[[Media:python_sheet.pdf|Python Cheat Sheet]]		**[[Media:python_sheet.pdf|Python Cheat Sheet]]
	**[[Media:unxpython_tut_06.pdf|Unix&Python tutorial]]		**[[Media:unxpython_tut_06.pdf|Unix&Python tutorial]]
		+	*[http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/ Pycluster]: Open source Clustering software
	===Applications===		===Applications===

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Revision as of 13:19, 20 April 2010

Contents 1 Protocols 2 CSBL Part list 3 Software@CSBL for x-ray crystallography 4 Computing resources 5 Unix & Programming 5.1 Unix 5.2 Python 5.3 Applications 6 Windows

Protocols

• Molecular biology
• Protein biochemistry
• Chemistry

CSBL Part list

• Plasmids
• Strains
• Parts Registry

Software@CSBL for x-ray crystallography

• Installed at panflam and panpyro (cluster)

Computing resources

1. Compbio
2. Microbio
3. Panpyro
4. Panflam

Unix & Programming

Unix

• Installing Compilers
• SSH - how to connect the Lab. PC from your home
• X11 connection
  • Easy safe way is to use SSH's X forwarding:

ssh -X me@remotemachine

• check ssh_config & sshd_config (/etc/ssh/) by SSH

X11Forward yes

• old way - no need to follow

Your display will look to the remote machine like:

echo $DISPLAY
localhost:10.0
firefox --display=$DISPLAY &

xhost/export DISPLAY

• On your local machine:

xhost + remotemachine

• On the remote machine:

export DISPLAY=localhost:0.0

• After you're done, remove remote machine access from your xhost:

xhost -

• SCIM - Input Hangul
• Linux (Unix) commands
• The Linux Document Projects - Numerous useful documents & tutorials are available
• Change locale (language) for 'panpyro'

bash shell:
export LC_ALL=en_GB.ISO8859-1
export LANG=en_GB.ISO8859-1

Python

• BE.180 Biological Engineering Programming - Synthetic biology@MIT Check "Unix&Python" tutorials!
  • Python Cheat Sheet
  • Unix&Python tutorial
• Pycluster: Open source Clustering software

Applications

• MySQL
• Matlab
• R-project

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• Hypergraph: EC class

Windows

• MS-Word - 편집시 변경내용 추적