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Revision as of 18:07, 29 November 2009 (view source) Igchoi (Talk | contribs) (→Computing resources) ← Older edit		Revision as of 18:08, 29 November 2009 (view source) Igchoi (Talk | contribs) Newer edit →
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	#[[Panpyro]]		#[[Panpyro]]
	#[[Panflam]]		#[[Panflam]]
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-	==Unix & Programming==
-	===Unix===
-	*[https://help.ubuntu.com/community/InstallingCompilers Installing Compilers]
-	*[[SSH]] - how to connect the Lab. PC from your home
-	*X11 connection
-	**Easy safe way is to use SSH's X forwarding:
-	<pre>ssh -X me@remotemachine</pre>
-	*check ''ssh_config & sshd_config'' (/etc/ssh/) by [http://www.ssh.com/support/documentation/online/ssh/adminguide/32/X11_Forwarding.html SSH]
-	<pre>X11Forward yes</pre>
-	*<b>''old way - no need to follow''</b>
-	Your display will look to the remote machine like:
-	<pre>echo $DISPLAY
-	localhost:10.0
-	firefox --display=$DISPLAY &
-	</pre>
-	''xhost/export DISPLAY''
-	*On your local machine:
-	<pre>xhost + remotemachine</pre>
-	*On the remote machine:
-	<pre>export DISPLAY=localhost:0.0</pre>
-	*After you're done, remove remote machine access from your xhost:
-	<pre>xhost -</pre>
-
-	*SCIM - [http://www.ubuntu.or.kr Input Hangul]
-	*Linux (Unix) [http://hancoma.springnote.com/pages/621424.xhtml commands]
-	*[http://tldp.org/  The Linux Document Projects] - Numerous useful documents & tutorials are available
-	*Change locale (language) for 'panpyro'
-	<pre>bash shell:
-	export LC_ALL=en_GB.ISO8859-1
-	export LANG=en_GB.ISO8859-1
-	</pre>
-
-	===Python===
-	*[http://openwetware.org/wiki/BE.180  BE.180 Biological Engineering Programming] - Synthetic biology@MIT Check "Unix&Python" tutorials!
-	**[[Media:python_sheet.pdf|Python Cheat Sheet]]
-	**[[Media:unxpython_tut_06.pdf|Unix&Python tutorial]]
-
-	===Applications===
-	*[[MySQL|MySQL]]
-	*[[Matlab|Matlab]]
-	*[[R|R-project]]
-	----
-	*[http://www.redbrick.dcu.ie/~noel/ECwheel.html Hypergraph: EC class]
-
-
	==Unix & Programming==		==Unix & Programming==

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Revision as of 18:08, 29 November 2009

Contents 1 Protocols 2 Part list 3 X-ray programs 4 Computing resources 5 Unix & Programming 5.1 Unix 5.2 Python 5.3 Applications 6 Windows

Protocols

• Molecular biology
• Protein biochemistry
• Chemistry

Part list

• Plasmids
• Strains
• Parts Registry

X-ray programs

Computing resources

1. Compbio
2. Microbio
3. Panpyro
4. Panflam

Unix & Programming

Unix

• Installing Compilers
• SSH - how to connect the Lab. PC from your home
• X11 connection
  • Easy safe way is to use SSH's X forwarding:

ssh -X me@remotemachine

• check ssh_config & sshd_config (/etc/ssh/) by SSH

X11Forward yes

• old way - no need to follow

Your display will look to the remote machine like:

echo $DISPLAY
localhost:10.0
firefox --display=$DISPLAY &

xhost/export DISPLAY

• On your local machine:

xhost + remotemachine

• On the remote machine:

export DISPLAY=localhost:0.0

• After you're done, remove remote machine access from your xhost:

xhost -

• SCIM - Input Hangul
• Linux (Unix) commands
• The Linux Document Projects - Numerous useful documents & tutorials are available
• Change locale (language) for 'panpyro'

bash shell:
export LC_ALL=en_GB.ISO8859-1
export LANG=en_GB.ISO8859-1

Python

• BE.180 Biological Engineering Programming - Synthetic biology@MIT Check "Unix&Python" tutorials!
  • Python Cheat Sheet
  • Unix&Python tutorial

Applications

• MySQL
• Matlab
• R-project

---

• Hypergraph: EC class

Windows

• MS-Word - 편집시 변경내용 추적